CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0459700

Gene name
Homology with Arabidopsis Similar to At4g13990: exostosin family protein (HF=7e-2)

Module size 6 genes

NF 0.63

%ile 85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein O.I. H.G. S.X.
0.73 91.1 0.86 Os04g0494600 AK110895.1 - Protein of unknown function DUF642 family protein 5e-2 At3g17410 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.67 87.2 0.87 Os07g0524900 AK071512.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.67 87.2 0.89 Os04g0467000 AK073154.1 - Conserved hypothetical protein 2e+0 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) O.I. H.G. S.X.
0.46 60.9 0.88 Os02g0183000 9630.m00818 - Zinc-binding protein 2e-5 At2g12646 - O.I. H.G. S.X.
0.39 48.3 0.86 Os02g0454500 AK064156.1 - Membrane bound O-acyl transferase, MBOAT familyprotein 5e-5 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.8 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.220680.1.S1_at, orthologous to the query gene, Os10g0459700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 82.2 PtpAffx.220680.1.S1_at At4g13990 hypothetical protein - 1e+1 At5g07190 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) O.I. H.G. S.X.
0.44 71.9 PtpAffx.223939.1.S1_x_at At4g13990 hypothetical protein - 6e+0 Atcg01090 - O.I. H.G. S.X.
0.44 71.9 PtpAffx.218733.1.S1_at At4g13990 hypothetical protein - 7e+0 At2g29960 CYP5 (CYCLOPHILIN 5) O.I. H.G. S.X.
0.38 63.7 PtpAffx.38121.1.A1_at At4g13990 - - 3e+0 At3g01185 unknown protein O.I. H.G. S.X.
0.36 61.6 PtpAffx.214644.1.S1_at At4g13990 hypothetical protein - 1e+0 At4g04080 ISU3 (ISCU-LIKE 3) O.I. H.G. S.X.
0.13 21.6 PtpAffx.220920.1.S1_at At4g13990 hypothetical protein - 2e+0 At3g55330 PPL1 (PsbP-like protein 1) O.I. H.G. S.X.
0.13 21.6 PtpAffx.43118.1.A1_at At4g13990 - - 4e-1 At5g22720 F-box family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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