CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0459700

Gene name
Homology with Arabidopsis Similar to At4g13990: exostosin family protein (HF=7e-2)

Module size 6 genes

NF 0.63

%ile 85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein O.I. H.G. S.X.
0.73 91.1 0.86 Os04g0494600 AK110895.1 - Protein of unknown function DUF642 family protein 5e-2 At3g17410 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.67 87.2 0.87 Os07g0524900 AK071512.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.67 87.2 0.89 Os04g0467000 AK073154.1 - Conserved hypothetical protein 2e+0 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) O.I. H.G. S.X.
0.46 60.9 0.88 Os02g0183000 9630.m00818 - Zinc-binding protein 2e-5 At2g12646 - O.I. H.G. S.X.
0.39 48.3 0.86 Os02g0454500 AK064156.1 - Membrane bound O-acyl transferase, MBOAT familyprotein 5e-5 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.87	Os10g0459700	AK110328.1	-	Xyloglucan galactosyltransferase	7e-2	At4g13990	exostosin family protein	O.I.	H.G.	S.X.
0.73	91.1	0.86	Os04g0494600	AK110895.1	-	Protein of unknown function DUF642 family protein	5e-2	At3g17410	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.67	87.2	0.87	Os07g0524900	AK071512.1	-	Protein of unknown function DUF6 domain containingprotein	3e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.
0.67	87.2	0.89	Os04g0467000	AK073154.1	-	Conserved hypothetical protein	2e+0	At4g30850	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	O.I.	H.G.	S.X.
0.46	60.9	0.88	Os02g0183000	9630.m00818	-	Zinc-binding protein	2e-5	At2g12646	-	O.I.	H.G.	S.X.
0.39	48.3	0.86	Os02g0454500	AK064156.1	-	Membrane bound O-acyl transferase, MBOAT familyprotein	5e-5	At5g55360	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.8 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
36.8	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.4	98.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.53962.1.S1_at, orthologous to the query gene, Os10g0459700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.84 92.6 GmaAffx.53962.1.S1_at At4g13990 - - 2e-16 At5g62220 exostosin family protein O.I. H.G. S.X.
0.30 40.4 Gma.3594.2.S1_at At4g13990 - - 7e-3 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) O.I. H.G. S.X.
0.29 39.0 GmaAffx.5736.1.S1_at At4g13990 - - 2e-26 At3g07990 SCPL27 (serine carboxypeptidase-like 27) O.I. H.G. S.X.
0.25 32.6 Gma.2116.1.A1_at At4g13990 - - 5e+0 At5g56880 unknown protein O.I. H.G. S.X.
0.24 30.9 Gma.1939.1.S1_at At4g13990 - - 8e-19 At4g19120 ERD3 (early-responsive to dehydration 3) O.I. H.G. S.X.
0.23 29.9 Gma.2116.1.A1_s_at At4g13990 - - 5e+0 At5g56880 unknown protein O.I. H.G. S.X.
0.20 25.1 Gma.9916.1.S1_at At4g13990 - - 6e-15 At4g15800 RALFL33 (ralf-like 33) O.I. H.G. S.X.
0.16 19.7 GmaAffx.69683.1.S1_at At4g13990 - - 7e-9 At5g17790 VAR3 (VARIEGATED 3) O.I. H.G. S.X.
0.14 17.5 Gma.11221.1.S1_at At4g13990 - - 9e-13 At5g12470 unknown protein O.I. H.G. S.X.
0.14 17.5 Gma.7749.1.A1_at At4g13990 - - 8e-9 At1g74910 ADP-glucose pyrophosphorylase family protein O.I. H.G. S.X.
0.14 17.5 Gma.301.1.S1_at At4g13990 - - 1e-32 At3g13490 OVA5 (OVULE ABORTION 5) O.I. H.G. S.X.
0.13 16.3 GmaAffx.2203.1.S1_at At4g13990 - - 2e-15 At4g19070 cadmium-responsive protein / cadmium induced protein (AS8) O.I. H.G. S.X.
0.13 16.3 Gma.1484.1.S1_at At4g13990 - - 6e-1 At3g29320 glucan phosphorylase, putative O.I. H.G. S.X.
0.13 16.3 Gma.10721.1.S1_at At4g13990 Ferric leghemoglobin reductase-2 precursor - 5e-33 At3g17240 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) O.I. H.G. S.X.
0.13 16.3 Gma.15750.1.S1_at At4g13990 - - 6e-16 At4g28730 glutaredoxin family protein O.I. H.G. S.X.
0.12 15.1 GmaAffx.82783.1.S1_at At4g13990 - - 5e-54 At5g18520 - O.I. H.G. S.X.
0.12 15.1 Gma.4188.1.S1_a_at At4g13990 - - 2e-9 At5g65470 unknown protein O.I. H.G. S.X.
0.09 12.0 Gma.15088.1.S1_at At4g13990 - - 6e-38 At4g29670 thioredoxin family protein O.I. H.G. S.X.
0.08 11.0 Gma.8378.1.S1_at At4g13990 - - 1e-17 At4g14360 dehydration-responsive protein-related O.I. H.G. S.X.
0.04 7.0 GmaAffx.20425.1.A1_at At4g13990 Beta-tubulin - 3e-6 At5g44340 TUB4 O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.84	92.6	GmaAffx.53962.1.S1_at	At4g13990	-	-	2e-16	At5g62220	exostosin family protein	O.I.	H.G.	S.X.
0.30	40.4	Gma.3594.2.S1_at	At4g13990	-	-	7e-3	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.
0.29	39.0	GmaAffx.5736.1.S1_at	At4g13990	-	-	2e-26	At3g07990	SCPL27 (serine carboxypeptidase-like 27)	O.I.	H.G.	S.X.
0.25	32.6	Gma.2116.1.A1_at	At4g13990	-	-	5e+0	At5g56880	unknown protein	O.I.	H.G.	S.X.
0.24	30.9	Gma.1939.1.S1_at	At4g13990	-	-	8e-19	At4g19120	ERD3 (early-responsive to dehydration 3)	O.I.	H.G.	S.X.
0.23	29.9	Gma.2116.1.A1_s_at	At4g13990	-	-	5e+0	At5g56880	unknown protein	O.I.	H.G.	S.X.
0.20	25.1	Gma.9916.1.S1_at	At4g13990	-	-	6e-15	At4g15800	RALFL33 (ralf-like 33)	O.I.	H.G.	S.X.
0.16	19.7	GmaAffx.69683.1.S1_at	At4g13990	-	-	7e-9	At5g17790	VAR3 (VARIEGATED 3)	O.I.	H.G.	S.X.
0.14	17.5	Gma.11221.1.S1_at	At4g13990	-	-	9e-13	At5g12470	unknown protein	O.I.	H.G.	S.X.
0.14	17.5	Gma.7749.1.A1_at	At4g13990	-	-	8e-9	At1g74910	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.
0.14	17.5	Gma.301.1.S1_at	At4g13990	-	-	1e-32	At3g13490	OVA5 (OVULE ABORTION 5)	O.I.	H.G.	S.X.
0.13	16.3	GmaAffx.2203.1.S1_at	At4g13990	-	-	2e-15	At4g19070	cadmium-responsive protein / cadmium induced protein (AS8)	O.I.	H.G.	S.X.
0.13	16.3	Gma.1484.1.S1_at	At4g13990	-	-	6e-1	At3g29320	glucan phosphorylase, putative	O.I.	H.G.	S.X.
0.13	16.3	Gma.10721.1.S1_at	At4g13990	Ferric leghemoglobin reductase-2 precursor	-	5e-33	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.
0.13	16.3	Gma.15750.1.S1_at	At4g13990	-	-	6e-16	At4g28730	glutaredoxin family protein	O.I.	H.G.	S.X.
0.12	15.1	GmaAffx.82783.1.S1_at	At4g13990	-	-	5e-54	At5g18520	-	O.I.	H.G.	S.X.
0.12	15.1	Gma.4188.1.S1_a_at	At4g13990	-	-	2e-9	At5g65470	unknown protein	O.I.	H.G.	S.X.
0.09	12.0	Gma.15088.1.S1_at	At4g13990	-	-	6e-38	At4g29670	thioredoxin family protein	O.I.	H.G.	S.X.
0.08	11.0	Gma.8378.1.S1_at	At4g13990	-	-	1e-17	At4g14360	dehydration-responsive protein-related	O.I.	H.G.	S.X.
0.04	7.0	GmaAffx.20425.1.A1_at	At4g13990	Beta-tubulin	-	3e-6	At5g44340	TUB4	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os10g0459700
Gene name
Homology with Arabidopsis	Similar to At4g13990: exostosin family protein (HF=7e-2)
Module size	6 genes
NF	0.63
%ile	85.7

Co-expression analysis

Gene ID Os10g0459700 Gene name Homology with ArabidopsisSimilar to At4g13990: exostosin family protein (HF=7e-2) Module size 6 genes NF 0.63 %ile 85.7

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0459700

Gene name
Homology with Arabidopsis Similar to At4g13990: exostosin family protein (HF=7e-2)

Module size 6 genes

NF 0.63

%ile 85.7

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays