Co-expression analysis

Gene ID	Os10g0455100
Gene name
Homology with Arabidopsis	Similar to At5g39140: unknown protein (HF=9e-2)
Module size	6 genes
NF	0.70
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.6	0.89	Os10g0455100	CA758094	-	Eggshell protein family protein	9e-2	At5g39140	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	0.92	Os04g0684300	AK105205.1	-	Hypothetical protein	2e+1	Atcg00560	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	0.93	Os04g0423800	AK108989.1	-	Peroxidase precursor (EC 1.11.1.7)	3e-3	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.93	Os03g0245500	AK064707.1	-	Curculin-like (mannose-binding) lectin domaincontaining protein	1e+1	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.93	Os07g0193000	9635.m00915	-	HIPL1 protein precursor	3e-1	At5g62630	HIPL2 (HIPL2 PROTEIN PRECURSOR)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	0.92	Os07g0421300	AK121014.1	-	Glycoside hydrolase, family 31 protein	7e-15	At3g23640	HGL1 (heteroglycan glucosidase 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	97.9	GSM429984	Rice wild-type panicle rep2	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
8.5	97.7	GSM159198	Inflorescence (P4, 10 - 15 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
7.8	97.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8	97.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7	97.3	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7	97.3	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5	97.2	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1	97.1	GSM159200	Inflorescence (P4, 10 - 15 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
6.0	97.0	GSM159199	Inflorescence (P4, 10 - 15 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.022	1	GO:0006979	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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