Co-expression analysis

Gene ID Os10g0417400
Gene name
Homology with ArabidopsisSimilar to At1g61353: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.70
%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.99Os10g0417400NM_196508.1--1e+0At1g61353unknown proteinO.I.H.G.S.X.
0.8094.60.99Os03g0556500AK107364.1-Conserved hypothetical protein3e-1At3g62420ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53)O.I.H.G.S.X.
0.7391.10.99Os03g04211019631.m03013--2e+0At4g39260GR-RBP8O.I.H.G.S.X.
0.6787.20.99Os05g0492200AF456243.1--6e-4At1g72150PATL1 (PATELLIN 1)O.I.H.G.S.X.
0.5978.00.99Os11g02737009639.m01592--1e+1At5g66815unknown proteinO.I.H.G.S.X.
0.5371.30.99Os01g0740000AK111315.1-Hypothetical protein5e+0At1g64440RHD1 (ROOT HAIR DEFECTIVE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.999.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
28.899.6GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
18.899.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
14.398.6GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.198.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.898.5GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.898.5GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0151GO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.Link to AmiGO
0.0121GO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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