CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0417100

Gene name
Homology with Arabidopsis Similar to At5g01640: PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5) (HF=1e+0)

Module size 21 genes

NF 0.61

%ile 82.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.98 Os10g0417100 9638.m02377 - - 1e+0 At5g01640 PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5) O.I. H.G. S.X.
0.72 89.8 0.98 Os07g0583300 9635.m03933 - - 7e-1 At3g26960 unknown protein O.I. H.G. S.X.
0.70 88.4 0.98 Os02g0672901 9630.m04375 - - 4e+0 At5g64990 AtRABH1a (Arabidopsis Rab GTPase homolog H1a) O.I. H.G. S.X.
0.70 88.4 0.99 Os03g0594000 NM_184833.1 - - 2e+0 At4g37530 peroxidase, putative O.I. H.G. S.X.
0.70 88.4 0.98 Os02g0463100 9630.m02493 - - 5e-3 At4g09660 - O.I. H.G. S.X.
0.70 88.4 0.98 Os11g0472800 9639.m02553 - - 3e+0 At5g27840 TOPP8 O.I. H.G. S.X.
0.70 88.4 0.98 Os09g0341300 9637.m01455 - - 2e+0 At3g50260 CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1) O.I. H.G. S.X.
0.68 87.5 0.98 Os06g0560900 9634.m03471 - - 8e-2 At4g09660 - O.I. H.G. S.X.
0.66 83.9 0.98 Os01g0607600 NM_192708.1 - Single-stranded DNA-binding protein, SSDP familyprotein 7e-8 At2g32700 WD-40 repeat family protein O.I. H.G. S.X.
0.65 83.8 0.98 Os09g0471600 AK119296.1 - Protein kinase domain containing protein 7e-9 At1g06700 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.64 83.4 0.98 Os05g0236600 9633.m01287 - - 6e-2 At4g19090 unknown protein O.I. H.G. S.X.
0.60 79.7 0.98 Os02g0188900 9630.m00874 - Cyclin-like F-box domain containing protein 6e-1 At3g48920 AtMYB45 (myb domain protein 45) O.I. H.G. S.X.
0.60 79.7 0.98 Os09g0239150 9637.m00389 - - 5e-2 At5g54410 unknown protein O.I. H.G. S.X.
0.55 73.7 0.98 Os10g0378025 NM_196167.1 - - 4e+0 At5g50915 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.55 73.7 0.98 Os11g0253100 9639.m01352 - - 4e+0 At5g26667 PYR6 O.I. H.G. S.X.
0.53 71.3 0.98 Os08g0216400 9636.m01102 - - 6e+0 At5g12020 HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) O.I. H.G. S.X.
0.51 68.7 0.98 Os12g0589400 AK119349.1 - Hypothetical protein 4e-1 At5g61440 ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5) O.I. H.G. S.X.
0.51 68.7 0.98 Os04g0642600 9632.m05345 - - 5e+0 Atmg00260 - O.I. H.G. S.X.
0.47 62.3 0.98 Os04g0442700 AK119975.1 - Hypothetical protein 6e+0 At5g43980 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) O.I. H.G. S.X.
0.45 58.8 0.98 Os08g0368300 9636.m02778 - - 3e+0 At4g10720 ankyrin repeat family protein O.I. H.G. S.X.
0.40 51.1 0.98 Os10g0398000 NM_196353.1 - - 4e+0 At5g40970 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	93.1	0.98	Os10g0417100	9638.m02377	-	-	1e+0	At5g01640	PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5)	O.I.	H.G.	S.X.
0.72	89.8	0.98	Os07g0583300	9635.m03933	-	-	7e-1	At3g26960	unknown protein	O.I.	H.G.	S.X.
0.70	88.4	0.98	Os02g0672901	9630.m04375	-	-	4e+0	At5g64990	AtRABH1a (Arabidopsis Rab GTPase homolog H1a)	O.I.	H.G.	S.X.
0.70	88.4	0.99	Os03g0594000	NM_184833.1	-	-	2e+0	At4g37530	peroxidase, putative	O.I.	H.G.	S.X.
0.70	88.4	0.98	Os02g0463100	9630.m02493	-	-	5e-3	At4g09660	-	O.I.	H.G.	S.X.
0.70	88.4	0.98	Os11g0472800	9639.m02553	-	-	3e+0	At5g27840	TOPP8	O.I.	H.G.	S.X.
0.70	88.4	0.98	Os09g0341300	9637.m01455	-	-	2e+0	At3g50260	CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)	O.I.	H.G.	S.X.
0.68	87.5	0.98	Os06g0560900	9634.m03471	-	-	8e-2	At4g09660	-	O.I.	H.G.	S.X.
0.66	83.9	0.98	Os01g0607600	NM_192708.1	-	Single-stranded DNA-binding protein, SSDP familyprotein	7e-8	At2g32700	WD-40 repeat family protein	O.I.	H.G.	S.X.
0.65	83.8	0.98	Os09g0471600	AK119296.1	-	Protein kinase domain containing protein	7e-9	At1g06700	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.64	83.4	0.98	Os05g0236600	9633.m01287	-	-	6e-2	At4g19090	unknown protein	O.I.	H.G.	S.X.
0.60	79.7	0.98	Os02g0188900	9630.m00874	-	Cyclin-like F-box domain containing protein	6e-1	At3g48920	AtMYB45 (myb domain protein 45)	O.I.	H.G.	S.X.
0.60	79.7	0.98	Os09g0239150	9637.m00389	-	-	5e-2	At5g54410	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.98	Os10g0378025	NM_196167.1	-	-	4e+0	At5g50915	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.55	73.7	0.98	Os11g0253100	9639.m01352	-	-	4e+0	At5g26667	PYR6	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os08g0216400	9636.m01102	-	-	6e+0	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	O.I.	H.G.	S.X.
0.51	68.7	0.98	Os12g0589400	AK119349.1	-	Hypothetical protein	4e-1	At5g61440	ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5)	O.I.	H.G.	S.X.
0.51	68.7	0.98	Os04g0642600	9632.m05345	-	-	5e+0	Atmg00260	-	O.I.	H.G.	S.X.
0.47	62.3	0.98	Os04g0442700	AK119975.1	-	Hypothetical protein	6e+0	At5g43980	PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)	O.I.	H.G.	S.X.
0.45	58.8	0.98	Os08g0368300	9636.m02778	-	-	3e+0	At4g10720	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os10g0398000	NM_196353.1	-	-	4e+0	At5g40970	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.7 99.3 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
13.5 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.2 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
22.7	99.3	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
13.5	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.2	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os10g0417100
Gene name
Homology with Arabidopsis	Similar to At5g01640: PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5) (HF=1e+0)
Module size	21 genes
NF	0.61
%ile	82.6

Co-expression analysis

Gene ID Os10g0417100 Gene name Homology with ArabidopsisSimilar to At5g01640: PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5) (HF=1e+0) Module size 21 genes NF 0.61 %ile 82.6

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0417100

Gene name
Homology with Arabidopsis Similar to At5g01640: PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5) (HF=1e+0)

Module size 21 genes

NF 0.61

%ile 82.6

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays