Co-expression analysis

Gene ID Os10g0416500
Gene name
Homology with ArabidopsisSimilar to At1g21050: unknown protein (HF=5e-1)
Module size 8 genes
NF 0.45
%ile 57.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7893.40.68Os10g0416500AK059767.1-Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulbchitinase-1) (TBC-1)5e-1At1g21050unknown proteinO.I.H.G.S.X.
0.4660.90.73Os01g0940700AB027428.1-Beta-1,3-glucanase (Fragment)4e-2At5g20560beta-1,3-glucanase, putativeO.I.H.G.S.X.
0.4660.90.78Os01g0940800AK068247.1-Beta-1,3-glucanase precursor1e-5At5g20560beta-1,3-glucanase, putativeO.I.H.G.S.X.
0.4355.40.70Os06g0726200AK061042.1-Endochitinase precursor (EC 3.2.1.14)2e-4At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.4253.90.70Os06g0493100AY256682.1-Hypothetical protein1e+0At5g38950germin-like protein-relatedO.I.H.G.S.X.
0.3338.80.68Os03g0663500U77656.1-Thaumatin, pathogenesis-related family protein7e+0At3g25400-O.I.H.G.S.X.
0.3338.80.82Os06g0591200AK062563.1-Conserved hypothetical protein1e-1At1g60950FED AO.I.H.G.S.X.
0.2422.40.64Os10g0504900AK063117.1-Lipid transfer protein9e-1At1g76965-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.599.6GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
20.499.1GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.198.3GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.198.2GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
9.297.9GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM375648Taichung 65_shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
8.897.8GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
8.897.8GSM375647Taichung 65_shoot_replicate 1GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0951GO:0006032The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.Link to AmiGO
0.0951GO:0051707A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.Link to AmiGO
0.0711GO:0016998The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage