CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0415800

Gene name
Homology with Arabidopsis Similar to At4g14570: acylaminoacyl-peptidase-related (HF=4e-4)

Module size 10 genes

NF 0.28

%ile 28.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.82 Os10g0415800 AK066318.1 - Acylamino acid-releasing enzyme 4e-4 At4g14570 acylaminoacyl-peptidase-related O.I. H.G. S.X.
0.48 63.7 0.83 Os03g0382100 9631.m02606 - Naringenin-chalcone synthase family protein 7e-1 At2g28630 KCS12 (3-KETOACYL-COA SYNTHASE 12) O.I. H.G. S.X.
0.48 63.7 0.85 Os01g0555100 AK111255.1 - Zn-finger, Ran-binding domain containing protein 5e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.
0.28 31.1 0.87 Os06g0108900 AK101029.1 - Homeobox domain containing protein 1e-12 At5g41410 BEL1 (BELL 1) O.I. H.G. S.X.
0.25 24.1 0.88 Os01g0789400 NM_195997.1 - Alpha subunit of RNA polymerase 2e-50 Atcg00740 - O.I. H.G. S.X.
0.20 16.5 0.84 Os09g0125900 AK065634.1 - ATP-binding cassette, sub-family G, member 1(White protein homolog) (ATP-binding cassette transporter8). Splice isoform 3 6e-2 At1g51500 CER5 (ECERIFERUM 5) O.I. H.G. S.X.
0.20 16.5 0.90 Os10g0356366 CR288737 - - 3e-30 Atcg00510 - O.I. H.G. S.X.
0.15 10.3 0.87 Os04g0465500 AK105909.1 - GCN5-related N-acetyltransferase domain containingprotein 6e-1 At1g24040 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.
0.14 9.3 0.89 Os04g0462300 AK109651.1 - Conserved hypothetical protein 4e-2 At3g25805 unknown protein O.I. H.G. S.X.
0.13 8.2 0.87 Os10g0196000 AK068170.1 - Cytochrome P450 family protein 4e+0 At2g40890 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.2 99.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
17.7 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.014 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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