CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0411800

Gene name
Homology with Arabidopsis Similar to At5g04800: 40S ribosomal protein S17 (RPS17D) (HF=7e-9)

Module size 19 genes

NF 0.70

%ile 92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 89.8 0.97 Os10g0411800 AK059434.1 - Ribosomal protein S17 7e-9 At5g04800 40S ribosomal protein S17 (RPS17D) O.I. H.G. S.X.
0.85 96.1 0.98 Os12g0508300 AK059123.1 - Conserved hypothetical protein 2e-20 At4g33865 40S ribosomal protein S29 (RPS29C) O.I. H.G. S.X.
0.84 96.0 0.98 Os01g0834500 AK058829.1 - 40S ribosomal protein S23 1e-93 At5g02960 40S ribosomal protein S23 (RPS23B) O.I. H.G. S.X.
0.83 95.8 0.98 Os02g0284600 AK121593.1 - 60S ribosomal protein L27 3e-11 At4g15000 60S ribosomal protein L27 (RPL27C) O.I. H.G. S.X.
0.82 95.0 0.98 Os08g0116500 AK060433.1 - 60S acidic ribosomal protein P1 (L12) 1e-3 At2g27720 60S acidic ribosomal protein P2 (RPP2A) O.I. H.G. S.X.
0.81 94.8 0.99 Os05g0160200 L31941.1 - The start codon is not identified. 6e-74 At2g47110 UBQ6 O.I. H.G. S.X.
0.81 94.8 0.98 Os02g0797200 AK120800.1 - 60S ribosomal protein L39 6e-11 At3g02190 60S ribosomal protein L39 (RPL39B) O.I. H.G. S.X.
0.68 87.5 0.98 Os01g0328400 AK061988.1 - Ubiquitin 7e-66 At2g47110 UBQ6 O.I. H.G. S.X.
0.68 87.5 0.98 Os09g0485900 AK064936.1 - 60S ribosomal protein L9 (Gibberellin-regulatedprotein GA) 5e-23 At1g33140 PGY2 (PIGGYBACK2) O.I. H.G. S.X.
0.65 83.8 0.98 Os03g0337800 AK102721.1 - 60S ribosomal protein L19 (Fragment) 2e-43 At1g02780 emb2386 (embryo defective 2386) O.I. H.G. S.X.
0.64 83.4 0.98 Os02g0717800 AK105284.1 - Ribosomal protein L31e domain containing protein 3e-10 At5g56710 60S ribosomal protein L31 (RPL31C) O.I. H.G. S.X.
0.63 82.7 0.98 Os10g0411700 AK058209.1 - Ribosomal protein S28 5e-3 At3g10090 40S ribosomal protein S28 (RPS28A) O.I. H.G. S.X.
0.61 81.2 0.99 Os03g0424500 AK104954.1 - 40S ribosomal protein S19 5e-10 At5g61170 40S ribosomal protein S19 (RPS19C) O.I. H.G. S.X.
0.61 81.2 0.98 Os03g0345200 D12633.1 - 40S ribosomal protein S21 3e-10 At5g27700 structural constituent of ribosome O.I. H.G. S.X.
0.61 81.2 0.98 Os07g0662500 D12821.1 - Elongation factor 1-beta' (EF-1-beta') 8e-25 At2g18110 elongation factor 1-beta, putative / EF-1-beta, putative O.I. H.G. S.X.
0.60 79.7 0.98 Os05g0459900 AK111268.1 - 60S ribosomal protein L36-1 4e-1 At4g31580 SRZ-22 O.I. H.G. S.X.
0.58 77.0 0.98 Os12g0567700 AK070647.1 - - 5e-75 At2g18020 EMB2296 (embryo defective 2296) O.I. H.G. S.X.
0.50 68.0 0.98 Os02g0699600 AK121709.1 - 60S ribosomal protein L12 1e-29 At5g60670 60S ribosomal protein L12 (RPL12C) O.I. H.G. S.X.
0.44 58.1 0.98 Os03g0141000 AK120267.1 - 60S ribosomal protein L21 5e-21 At1g09690 60S ribosomal protein L21 (RPL21C) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.3 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.8 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.0 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.2 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.045 1 GO:0006414 The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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