CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0410900

Gene name
Homology with Arabidopsis Similar to At2g37200: integral membrane protein, putative (HF=4e-1)

Module size 6 genes

NF 0.41

%ile 51.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 51.1 0.98 Os10g0410900 AK119279.1 - Hypothetical protein 4e-1 At2g37200 integral membrane protein, putative O.I. H.G. S.X.
0.44 58.1 0.99 Os05g0583200 AK102230.1 - BED finger domain containing protein 4e-1 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.40 51.1 0.98 Os02g0159400 AK109550.1 - Hypothetical protein 8e-2 At3g46666 unknown protein O.I. H.G. S.X.
0.37 45.0 0.98 Os07g0555300 AK071161.1 - Hypothetical protein 9e-2 At3g22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) O.I. H.G. S.X.
0.36 44.0 0.98 Os01g0818100 NM_191091.1 - - 2e-8 At5g01990 auxin efflux carrier family protein O.I. H.G. S.X.
0.36 44.0 0.99 Os09g0413300 9637.m02118 - TPR-like domain containing protein 3e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	91.1	0.98	Os02g0456000	AK119496.1	-	-	4e-6	At4g01400	-	O.I.	H.G.	S.X.
0.52	69.6	0.97	Os10g0129000	AU094243	-	Conserved hypothetical protein	3e+0	At5g24570	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.98	Os12g0626000	AK109499.1	-	Hypothetical protein	9e-3	At3g13570	SCL30a	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os10g0572000	NM_197842.1	-	GTP-binding protein, HSR1-related domaincontaining protein	6e-1	At5g64460	-	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os05g0175800	CB097090	-	Retrotransposon gag protein family protein	5e+0	At5g41430	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.36	44.0	0.97	Os11g0227100	9639.m01145	-	Disease resistance protein family protein	1e-1	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os11g0557700	AK107593.1	-	SAM (and some other nucleotide) binding motifdomain containing protein	9e-7	At4g34360	protease-related	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os01g0711200	AK107001.1	-	Protein kinase domain containing protein	3e-1	At2g46090	diacylglycerol kinase family protein	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os08g0128500	AY220689.1	-	60S ribosomal protein L37-A (L35) (YP55)	3e-1	At4g32295	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os11g0486000	AK106715.1	-	-	1e+0	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os06g0690900	9634.m04635	-	Protein prenyltransferase domain containingprotein	4e-1	At3g16710	-	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os02g0109900	9630.m00096	-	Conserved hypothetical protein	9e-1	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os06g0574600	AK070321.1	-	Resistance protein candidate (Fragment)	8e-3	At1g14370	APK2A (PROTEIN KINASE 2A)	O.I.	H.G.	S.X.
0.26	25.6	0.98	Os09g0536200	9637.m03080	-	ARM repeat fold domain containing protein	7e-5	At5g66200	ARO2 (ARMADILLO REPEAT ONLY 2)	O.I.	H.G.	S.X.
0.25	24.1	0.97	Os03g0253400	9631.m01426	-	Transcription factor, MADS-box domain containingprotein	1e+0	At2g05335	SCRL15 (SCR-Like 15)	O.I.	H.G.	S.X.
0.25	24.1	0.97	Os07g0553600	AK064506.1	-	Conserved hypothetical protein	3e-2	At1g20650	ATP binding / protein kinase/ protein serine/threonine kinase	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os11g0256100	9639.m01387	-	Protein prenyltransferase domain containingprotein	2e-1	At2g22070	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.9 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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