CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0410900

Gene name
Homology with Arabidopsis Similar to At2g37200: integral membrane protein, putative (HF=4e-1)

Module size 6 genes

NF 0.41

%ile 51.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 51.1 0.98 Os10g0410900 AK119279.1 - Hypothetical protein 4e-1 At2g37200 integral membrane protein, putative O.I. H.G. S.X.
0.44 58.1 0.99 Os05g0583200 AK102230.1 - BED finger domain containing protein 4e-1 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.40 51.1 0.98 Os02g0159400 AK109550.1 - Hypothetical protein 8e-2 At3g46666 unknown protein O.I. H.G. S.X.
0.37 45.0 0.98 Os07g0555300 AK071161.1 - Hypothetical protein 9e-2 At3g22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) O.I. H.G. S.X.
0.36 44.0 0.98 Os01g0818100 NM_191091.1 - - 2e-8 At5g01990 auxin efflux carrier family protein O.I. H.G. S.X.
0.36 44.0 0.99 Os09g0413300 9637.m02118 - TPR-like domain containing protein 3e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os10g0410900	AK119279.1	-	Hypothetical protein	4e-1	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.
0.44	58.1	0.99	Os05g0583200	AK102230.1	-	BED finger domain containing protein	4e-1	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os02g0159400	AK109550.1	-	Hypothetical protein	8e-2	At3g46666	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	0.98	Os07g0555300	AK071161.1	-	Hypothetical protein	9e-2	At3g22840	ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os01g0818100	NM_191091.1	-	-	2e-8	At5g01990	auxin efflux carrier family protein	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os09g0413300	9637.m02118	-	TPR-like domain containing protein	3e-1	At4g02750	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.9 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
58.0	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.0	98.3	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.9	98.1	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3	97.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2	97.4	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7	97.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.215694.1.S1_at, orthologous to the query gene, Os10g0410900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.79 95.3 PtpAffx.215694.1.S1_at At2g37200 hypothetical protein - 3e+0 At1g06980 unknown protein O.I. H.G. S.X.
0.32 55.2 PtpAffx.202018.1.S1_at At2g37200 - - 2e+0 At5g37900 seven in absentia (SINA) family protein O.I. H.G. S.X.
0.28 50.5 PtpAffx.203685.1.S1_x_at At2g37200 hypothetical protein - 8e-2 At3g20800 rcd1-like cell differentiation protein, putative O.I. H.G. S.X.
0.25 43.6 PtpAffx.67745.1.A1_at At2g37200 - - 3e+0 At5g66870 ASL1 O.I. H.G. S.X.
0.25 43.6 Ptp.4242.1.S1_at At2g37200 - - 4e+0 At5g43980 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) O.I. H.G. S.X.
0.24 41.8 PtpAffx.224608.1.S1_at At2g37200 hypothetical protein - 2e+0 At3g44960 unknown protein O.I. H.G. S.X.
0.22 38.3 PtpAffx.29152.1.A1_at At2g37200 - - 4e+0 At5g17620 - O.I. H.G. S.X.
0.19 32.7 PtpAffx.11311.1.A1_at At2g37200 hypothetical protein - 7e-2 At1g72600 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.19 32.7 PtpAffx.215255.1.S1_at At2g37200 hypothetical protein - 3e-1 At1g01820 PEX11C (PEROXIN 11C) O.I. H.G. S.X.
0.18 30.8 PtpAffx.200069.1.S1_s_at At2g37200 hypothetical protein - 1e-1 At1g52470 hydrolase O.I. H.G. S.X.
0.18 30.8 PtpAffx.208514.1.S1_at At2g37200 hypothetical protein - 2e+0 At4g27657 unknown protein O.I. H.G. S.X.
0.17 29.1 PtpAffx.224286.1.S1_at At2g37200 hypothetical protein - 7e-1 At2g29450 ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) O.I. H.G. S.X.
0.17 29.1 PtpAffx.24048.1.A1_at At2g37200 hypothetical protein - 4e-1 At1g74880 NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O) O.I. H.G. S.X.
0.16 26.9 PtpAffx.209480.1.S1_at At2g37200 - - 2e+0 At3g15900 unknown protein O.I. H.G. S.X.
0.15 25.3 PtpAffx.206465.1.S1_at At2g37200 hypothetical protein - 3e+0 At5g40620 unknown protein O.I. H.G. S.X.
0.15 25.3 PtpAffx.218477.1.S1_x_at At2g37200 hypothetical protein - 1e+0 At2g21650 MEE3 (MATERNAL EFFECT EMBRYO ARREST 3) O.I. H.G. S.X.
0.14 23.5 PtpAffx.217068.1.S1_at At2g37200 hypothetical protein - 3e-1 At3g19950 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.11 18.1 PtpAffx.211253.1.S1_x_at At2g37200 hypothetical protein - 5e-35 At1g18070 EF-1-alpha-related GTP-binding protein, putative O.I. H.G. S.X.
0.11 18.1 PtpAffx.207346.1.S1_at At2g37200 hypothetical protein - 6e-3 At1g43130 LCV2 (LIKE COV 2) O.I. H.G. S.X.
0.11 18.1 PtpAffx.220044.1.S1_at At2g37200 hypothetical protein - 5e-1 At5g50335 unknown protein O.I. H.G. S.X.
0.09 14.6 PtpAffx.147944.1.S1_at At2g37200 hypothetical protein - 3e-1 At4g14930 acid phosphatase survival protein SurE, putative O.I. H.G. S.X.
0.09 14.6 PtpAffx.88299.1.A1_at At2g37200 - - 6e+0 At3g11810 unknown protein O.I. H.G. S.X.
0.08 12.9 PtpAffx.221219.1.S1_at At2g37200 hypothetical protein - 3e-1 At1g15680 F-box family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.79	95.3	PtpAffx.215694.1.S1_at	At2g37200	hypothetical protein	-	3e+0	At1g06980	unknown protein	O.I.	H.G.	S.X.
0.32	55.2	PtpAffx.202018.1.S1_at	At2g37200	-	-	2e+0	At5g37900	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.
0.28	50.5	PtpAffx.203685.1.S1_x_at	At2g37200	hypothetical protein	-	8e-2	At3g20800	rcd1-like cell differentiation protein, putative	O.I.	H.G.	S.X.
0.25	43.6	PtpAffx.67745.1.A1_at	At2g37200	-	-	3e+0	At5g66870	ASL1	O.I.	H.G.	S.X.
0.25	43.6	Ptp.4242.1.S1_at	At2g37200	-	-	4e+0	At5g43980	PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)	O.I.	H.G.	S.X.
0.24	41.8	PtpAffx.224608.1.S1_at	At2g37200	hypothetical protein	-	2e+0	At3g44960	unknown protein	O.I.	H.G.	S.X.
0.22	38.3	PtpAffx.29152.1.A1_at	At2g37200	-	-	4e+0	At5g17620	-	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.11311.1.A1_at	At2g37200	hypothetical protein	-	7e-2	At1g72600	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.215255.1.S1_at	At2g37200	hypothetical protein	-	3e-1	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.
0.18	30.8	PtpAffx.200069.1.S1_s_at	At2g37200	hypothetical protein	-	1e-1	At1g52470	hydrolase	O.I.	H.G.	S.X.
0.18	30.8	PtpAffx.208514.1.S1_at	At2g37200	hypothetical protein	-	2e+0	At4g27657	unknown protein	O.I.	H.G.	S.X.
0.17	29.1	PtpAffx.224286.1.S1_at	At2g37200	hypothetical protein	-	7e-1	At2g29450	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	O.I.	H.G.	S.X.
0.17	29.1	PtpAffx.24048.1.A1_at	At2g37200	hypothetical protein	-	4e-1	At1g74880	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	O.I.	H.G.	S.X.
0.16	26.9	PtpAffx.209480.1.S1_at	At2g37200	-	-	2e+0	At3g15900	unknown protein	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.206465.1.S1_at	At2g37200	hypothetical protein	-	3e+0	At5g40620	unknown protein	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.218477.1.S1_x_at	At2g37200	hypothetical protein	-	1e+0	At2g21650	MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)	O.I.	H.G.	S.X.
0.14	23.5	PtpAffx.217068.1.S1_at	At2g37200	hypothetical protein	-	3e-1	At3g19950	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.11	18.1	PtpAffx.211253.1.S1_x_at	At2g37200	hypothetical protein	-	5e-35	At1g18070	EF-1-alpha-related GTP-binding protein, putative	O.I.	H.G.	S.X.
0.11	18.1	PtpAffx.207346.1.S1_at	At2g37200	hypothetical protein	-	6e-3	At1g43130	LCV2 (LIKE COV 2)	O.I.	H.G.	S.X.
0.11	18.1	PtpAffx.220044.1.S1_at	At2g37200	hypothetical protein	-	5e-1	At5g50335	unknown protein	O.I.	H.G.	S.X.
0.09	14.6	PtpAffx.147944.1.S1_at	At2g37200	hypothetical protein	-	3e-1	At4g14930	acid phosphatase survival protein SurE, putative	O.I.	H.G.	S.X.
0.09	14.6	PtpAffx.88299.1.A1_at	At2g37200	-	-	6e+0	At3g11810	unknown protein	O.I.	H.G.	S.X.
0.08	12.9	PtpAffx.221219.1.S1_at	At2g37200	hypothetical protein	-	3e-1	At1g15680	F-box family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os10g0410900
Gene name
Homology with Arabidopsis	Similar to At2g37200: integral membrane protein, putative (HF=4e-1)
Module size	6 genes
NF	0.41
%ile	51.0

Co-expression analysis

Gene ID Os10g0410900 Gene name Homology with ArabidopsisSimilar to At2g37200: integral membrane protein, putative (HF=4e-1) Module size 6 genes NF 0.41 %ile 51.0

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0410900

Gene name
Homology with Arabidopsis Similar to At2g37200: integral membrane protein, putative (HF=4e-1)

Module size 6 genes

NF 0.41

%ile 51.0

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays