CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0395700

Gene name
Homology with Arabidopsis Similar to At1g10960: ATFD1 (FERREDOXIN 1) (HF=5e-2)

Module size 6 genes

NF 0.26

%ile 25.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.99 Os10g0395700 9638.m02169 - - 5e-2 At1g10960 ATFD1 (FERREDOXIN 1) O.I. H.G. S.X.
0.67 87.2 0.99 Os06g0110300 XM_353939.1 - - 5e-1 At5g67490 unknown protein O.I. H.G. S.X.
0.29 31.1 0.99 Os01g0245565 NM_188753.1 - - 1e+1 At5g13080 WRKY75 O.I. H.G. S.X.
0.23 21.2 0.99 Os07g0106850 NM_194245.1 - - 4e-1 At5g28360 ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE) O.I. H.G. S.X.
0.22 19.4 0.99 Os06g0491500 9634.m02839 - - 7e-1 At5g14380 AGP6 (Arabinogalactan proteins 6) O.I. H.G. S.X.
0.07 3.7 0.99 Os01g0146500 9629.m00457 - - 6e+0 At5g08505 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.8 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.9 99.0 GSM159220 Seed (S5, 21 - 29 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
15.2 98.7 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
13.4 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.6 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM159221 Seed (S5, 21 - 29 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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