CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0388500

Gene name
Homology with Arabidopsis Similar to At5g37200: zinc finger (C3HC4-type RING finger) family protein (HF=4e+0)

Module size 8 genes

NF 0.39

%ile 46.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 83.4 0.89 Os10g0388500 AK120894.1 - - 4e+0 At5g37200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.46 60.9 0.92 Os04g0227100 AK120507.1 - - 6e-1 At3g47580 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.42 53.9 0.90 Os08g0363200 AK064067.1 - Hypothetical protein 7e-1 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.36 44.0 0.92 Os01g0820800 AK106944.1 - Conserved hypothetical protein 3e+0 At3g26510 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein O.I. H.G. S.X.
0.32 36.3 0.93 Os01g0933400 AK070303.1 - Hypothetical protein 7e-1 At1g21600 PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) O.I. H.G. S.X.
0.29 31.1 0.93 Os01g0838100 AK065393.1 - Nucleic acid-binding OB-fold domain containingprotein 2e+0 At5g06830 unknown protein O.I. H.G. S.X.
0.28 31.1 0.90 Os07g0228600 AK067554.1 - - 2e+0 At3g51510 unknown protein O.I. H.G. S.X.
0.27 27.5 0.90 Os05g0543800 AK102850.1 - Hypothetical protein 4e+0 Atmg00720 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.7 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.3 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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