Co-expression analysis

Gene ID Os10g0379366
Gene name
Homology with ArabidopsisSimilar to At4g15520: tRNA/rRNA methyltransferase (SpoU) family protein (HF=3e+0)
Module size 6 genes
NF 0.71
%ile 93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.97Os10g03793669638.m01986--3e+0At4g15520tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.S.X.
0.7391.10.97Os08g05165009636.m04096--5e-2At2g41130basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.7391.10.97Os01g03520009629.m02422--7e+0At5g09978PEP7 (ELICITOR PEPTIDE 7 PRECURSOR)O.I.H.G.S.X.
0.6787.20.98Os11g05233009639.m02915--7e-1At1g07950surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.5068.00.97Os09g04959009637.m02814--9e-1At3g48800sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.4762.30.97Os06g02630009634.m01522--3e+0At5g02811unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.999.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
32.199.7GSM302915emb6D_rep2GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
21.899.2GSM302914emb6D_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
21.599.2GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
21.199.2GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
20.699.1GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.399.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.999.0GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.198.9GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.098.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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