CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0360100

Gene name
Homology with Arabidopsis Similar to At1g23150: unknown protein (HF=2e-2)

Module size 6 genes

NF 0.01

%ile 0.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.82 Os10g0360100 AK121279.1 - Sugar transporter protein 2e-2 At1g23150 unknown protein O.I. H.G. S.X.
0.02 1.0 0.89 Os04g0458600 AK106058.1 - Non-cell-autonomous protein pathway2 3e-3 At3g47800 aldose 1-epimerase family protein O.I. H.G. S.X.
0.02 1.0 0.89 Os01g0877900 AK111134.1 - Hypothetical protein 3e-1 At1g69210 unknown protein O.I. H.G. S.X.
0.01 0.5 0.89 Os07g0485000 AK070085.1 - Trehalose-6-phosphate phosphatase 3e-2 At4g12430 trehalose-6-phosphate phosphatase, putative O.I. H.G. S.X.
- 0.1 0.86 Os03g0160000 AK068259.1 - Hypothetical protein 1e+0 At4g27340 Met-10+ like family protein O.I. H.G. S.X.
- 0.1 0.87 Os09g0325800 AK105247.1 - Conserved hypothetical protein 2e+0 At3g42310 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.7 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
8.8 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.043 1 GO:0008643 The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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