CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0356366

Gene name
Homology with Arabidopsis Similar to Atcg00510: - (HF=3e-30)

Module size 6 genes

NF 0.76

%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 51.1 0.93 Os10g0356366 CR288737 - - 3e-30 Atcg00510 - O.I. H.G. S.X.
0.80 94.6 0.93 Os01g0791600 9633.m03286 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 4e-129 Atcg00490 - O.I. H.G. S.X.
0.77 93.1 0.93 Os01g0792400 AK062797.1 - Photosystem I assembly protein ycf4 2e-53 Atcg00520 - O.I. H.G. S.X.
0.77 93.1 0.93 Os10g0527100 BI795990 - Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV) 2e+0 At5g15850 COL1 (constans-like 1) O.I. H.G. S.X.
0.73 91.1 0.93 Os06g0598500 AK058623.1 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 0 Atcg00490 - O.I. H.G. S.X.
0.67 87.2 0.94 Os04g0235600 CR291556 - ATP synthase B chain (EC 3.6.3.14) (Subunit I) 2e-42 Atcg00130 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	91.1	0.91	Os01g0789400	NM_195997.1	-	Alpha subunit of RNA polymerase	2e-50	Atcg00740	-	O.I.	H.G.	S.X.
0.67	87.2	0.96	Os01g0749400	AK067731.1	-	Glycosyl transferase, family 20 domain containingprotein	2e-12	At1g06410	ATTPS7	O.I.	H.G.	S.X.
0.61	81.2	0.87	Os12g0242800	AK107948.1	-	TRAM, LAG1 and CLN8 homology domain containingprotein	8e+0	At3g23727	SCRL12 (SCR-Like 12)	O.I.	H.G.	S.X.
0.60	79.7	0.84	Os10g0415800	AK066318.1	-	Acylamino acid-releasing enzyme	4e-4	At4g14570	acylaminoacyl-peptidase-related	O.I.	H.G.	S.X.
0.50	68.0	0.89	Os03g0248200	AK070050.1	-	Cytochrome P450 family protein	9e-1	At3g26180	CYP71B20	O.I.	H.G.	S.X.
0.47	62.3	0.81	Os01g0117900	CR284643	-	Nodulin-like protein 5NG4	1e+0	At5g62750	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.86	Os06g0314600	AK067321.1	-	Floral nectary-specific protein	2e-1	At1g15125	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	O.I.	H.G.	S.X.
0.40	51.1	0.89	Os02g0186400	AK067643.1	-	Spectrin repeat containing protein	1e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.94	Os01g0338600	AK066580.1	-	Conserved hypothetical protein	6e-29	At2g43945	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.86	Os06g0552900	9634.m03404	-	Terminal flower1 (Fragment)	3e-1	At1g65480	FT (FLOWERING LOCUS T)	O.I.	H.G.	S.X.
0.33	38.8	0.91	Os05g0292600	AK071967.1	-	Chloroplast 50S ribosomal protein L14	5e-68	Atcg00780	-	O.I.	H.G.	S.X.
0.33	38.8	0.92	Os08g0566400	AK067804.1	-	Carbohydrate kinase, PfkB family protein	1e-12	At4g28706	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.
0.32	36.3	0.86	Os11g0181700	AK065928.1	-	Short-chain dehydrogenase Tic32	3e-1	At1g08080	ACA7 (ALPHA CARBONIC ANHYDRASE 7)	O.I.	H.G.	S.X.
0.32	36.3	0.88	Os08g0224500	AK106897.1	-	Glycoside hydrolase, family 17 protein	3e-1	At5g20870	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.
0.31	34.5	0.88	Os05g0582800	AK069785.1	-	Peptidase S10, serine carboxypeptidase familyprotein	3e+0	At1g15000	scpl50 (serine carboxypeptidase-like 50)	O.I.	H.G.	S.X.
0.27	27.5	0.83	Os10g0133600	NM_194751.1	-	Protein kinase-like domain containing protein	3e+0	At4g21830	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	H.G.	S.X.
0.26	25.6	0.87	Os11g0444000	AK099588.1	-	UDP-glucosyltransferase BX8	2e-1	At5g05870	UGT76C1 (UDP-glucosyl transferase 76C1)	O.I.	H.G.	S.X.
0.26	25.6	0.89	Os03g0131900	AK099900.1	-	Chromo domain containing protein	3e-3	At2g47450	CAO (CHAOS)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.7 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.6 99.7 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3 99.2 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.8 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0006818 The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.
0.063 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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