CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0356366

Gene name
Homology with Arabidopsis Similar to Atcg00510: - (HF=3e-30)

Module size 6 genes

NF 0.76

%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 51.1 0.93 Os10g0356366 CR288737 - - 3e-30 Atcg00510 - O.I. H.G. S.X.
0.80 94.6 0.93 Os01g0791600 9633.m03286 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 4e-129 Atcg00490 - O.I. H.G. S.X.
0.77 93.1 0.93 Os01g0792400 AK062797.1 - Photosystem I assembly protein ycf4 2e-53 Atcg00520 - O.I. H.G. S.X.
0.77 93.1 0.93 Os10g0527100 BI795990 - Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV) 2e+0 At5g15850 COL1 (constans-like 1) O.I. H.G. S.X.
0.73 91.1 0.93 Os06g0598500 AK058623.1 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 0 Atcg00490 - O.I. H.G. S.X.
0.67 87.2 0.94 Os04g0235600 CR291556 - ATP synthase B chain (EC 3.6.3.14) (Subunit I) 2e-42 Atcg00130 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.7 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.6 99.7 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3 99.2 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.8 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0006818 The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.
0.063 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.54545.1.S1_at, orthologous to the query gene, Os10g0356366

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 GmaAffx.54545.1.S1_at Atcg00510 - - 4e+0 At5g38380 - O.I. H.G. S.X.
0.80 91.5 Gma.849.1.S1_at Atcg00510 - - 4e-4 At3g21190 unknown protein O.I. H.G. S.X.
0.67 86.1 Gma.852.1.S1_at Atcg00510 - - 1e+0 At5g53205 unknown protein O.I. H.G. S.X.
0.59 79.5 GmaAffx.69825.1.A1_at Atcg00510 - - 3e+0 At5g49210 unknown protein O.I. H.G. S.X.
0.59 79.5 GmaAffx.17500.1.A1_at Atcg00510 - - 2e+0 At5g38680 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.53 74.2 GmaAffx.34894.1.S1_at Atcg00510 - - 1e+0 At5g40690 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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