CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0350100

Gene name
Homology with Arabidopsis Similar to At3g47710: bHLH family protein (HF=4e-1)

Module size 6 genes

NF 0.87

%ile 99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os10g0350100 NM_195936.1 - - 4e-1 At3g47710 bHLH family protein O.I. H.G. S.X.
0.83 95.8 0.98 Os04g0366500 9632.m02816 - - 1e+1 At3g51060 STY1 (STYLISH 1) O.I. H.G. S.X.
0.83 95.8 0.98 Os01g0528900 9629.m03236 - - 4e+0 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.83 95.8 0.98 Os01g0521100 9629.m03165 - Hypothetical protein 3e+0 At4g10420 - O.I. H.G. S.X.
0.80 94.6 0.99 Os08g0426200 9636.m03305 - - 2e+0 At3g17580 unknown protein O.I. H.G. S.X.
0.63 82.7 0.98 Os09g0356700 9637.m01615 - - 6e-1 At4g21610 LOL2 (LSD ONE LIKE 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.99	Os10g0350100	NM_195936.1	-	-	4e-1	At3g47710	bHLH family protein	O.I.	H.G.	S.X.
0.83	95.8	0.98	Os04g0366500	9632.m02816	-	-	1e+1	At3g51060	STY1 (STYLISH 1)	O.I.	H.G.	S.X.
0.83	95.8	0.98	Os01g0528900	9629.m03236	-	-	4e+0	At4g31150	endonuclease V family protein	O.I.	H.G.	S.X.
0.83	95.8	0.98	Os01g0521100	9629.m03165	-	Hypothetical protein	3e+0	At4g10420	-	O.I.	H.G.	S.X.
0.80	94.6	0.99	Os08g0426200	9636.m03305	-	-	2e+0	At3g17580	unknown protein	O.I.	H.G.	S.X.
0.63	82.7	0.98	Os09g0356700	9637.m01615	-	-	6e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.75	91.9	0.97	Os02g0165300	9630.m00631	-	-	9e-6	At4g18400	unknown protein	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os04g0332900	9632.m02496	-	-	3e+0	At5g17150	-	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os04g0134700	9632.m00384	-	-	1e+1	At5g58500	LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)	O.I.	H.G.	S.X.
0.61	81.2	0.97	Os11g0617400	9639.m03684	-	-	5e-2	At5g07560	GRP20 (GLYCINE-RICH PROTEIN 20)	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os08g0426050	9636.m03303	-	-	9e-2	At4g38950	kinesin motor family protein	O.I.	H.G.	S.X.
0.60	79.7	0.95	Os12g0473000	9640.m02772	-	-	4e-1	At3g11640	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.98	Os09g0133300	9637.m00323	-	-	7e-1	At3g62760	ATGSTF13	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os04g0547500	9632.m04453	-	-	5e-4	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	O.I.	H.G.	S.X.
0.47	62.3	0.97	Os09g0343100	9637.m01473	-	Conserved hypothetical protein	2e+0	At5g18060	auxin-responsive protein, putative	O.I.	H.G.	S.X.
0.46	60.9	0.97	Os07g0245801	9635.m01414	-	-	3e-1	At1g48770	unknown protein	O.I.	H.G.	S.X.
0.43	55.4	0.95	Os03g0365700	9631.m02443	-	-	6e+0	At5g19490	DNA binding / sequence-specific DNA binding	O.I.	H.G.	S.X.
0.43	55.4	0.98	Os07g0601300	9635.m04099	-	-	2e+0	At3g04310	unknown protein	O.I.	H.G.	S.X.
0.42	53.9	0.97	Os01g0829700	AK109789.1	-	Conserved hypothetical protein	2e-1	At1g03700	-	O.I.	H.G.	S.X.
0.41	52.4	0.97	Os12g0522900	9640.m03280	-	-	3e-2	At1g19510	ATRL5 (ARABIDOPSIS RAD-LIKE 5)	O.I.	H.G.	S.X.
0.40	51.1	0.96	Os10g0175000	9638.m00837	-	-	6e+0	At5g01250	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	O.I.	H.G.	S.X.
0.38	46.9	0.89	Os01g0536600	9629.m03316	-	Disease resistance protein family protein	3e-1	At5g60970	TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5)	O.I.	H.G.	S.X.
0.35	41.7	0.96	Os12g0251200	9640.m01445	-	-	3e-1	At5g58784	dehydrodolichyl diphosphate synthase	O.I.	H.G.	S.X.
0.33	38.8	0.95	Os02g0541000	AK107551.1	-	Conserved hypothetical protein	7e-2	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os01g0202000	NM_188306.1	-	-	1e+0	At5g60370	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.92	Os08g0317400	9636.m02207	-	-	7e-2	At3g14250	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.26	25.6	0.95	Os08g0259250	9636.m01601	-	-	1e+0	At5g26114	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.95	Os09g0395000	9637.m01974	-	-	1e+1	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
73.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
59.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.2 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
9.9 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
73.9	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
59.6	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
32.2	99.7	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.1	98.4	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM255762	wt collar chip	GSE12097	antiOsLIC collar chip
9.9	98.0	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9	98.0	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os10g0350100
Gene name
Homology with Arabidopsis	Similar to At3g47710: bHLH family protein (HF=4e-1)
Module size	6 genes
NF	0.87
%ile	99.3

Co-expression analysis

Gene ID Os10g0350100 Gene name Homology with ArabidopsisSimilar to At3g47710: bHLH family protein (HF=4e-1) Module size 6 genes NF 0.87 %ile 99.3

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0350100

Gene name
Homology with Arabidopsis Similar to At3g47710: bHLH family protein (HF=4e-1)

Module size 6 genes

NF 0.87

%ile 99.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays