CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0350100

Gene name
Homology with Arabidopsis Similar to At3g47710: bHLH family protein (HF=4e-1)

Module size 6 genes

NF 0.87

%ile 99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os10g0350100 NM_195936.1 - - 4e-1 At3g47710 bHLH family protein O.I. H.G. S.X.
0.83 95.8 0.98 Os04g0366500 9632.m02816 - - 1e+1 At3g51060 STY1 (STYLISH 1) O.I. H.G. S.X.
0.83 95.8 0.98 Os01g0528900 9629.m03236 - - 4e+0 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.83 95.8 0.98 Os01g0521100 9629.m03165 - Hypothetical protein 3e+0 At4g10420 - O.I. H.G. S.X.
0.80 94.6 0.99 Os08g0426200 9636.m03305 - - 2e+0 At3g17580 unknown protein O.I. H.G. S.X.
0.63 82.7 0.98 Os09g0356700 9637.m01615 - - 6e-1 At4g21610 LOL2 (LSD ONE LIKE 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
73.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
59.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.2 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
9.9 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.16810.2.A1_at, orthologous to the query gene, Os10g0350100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.6 Zm.16810.2.A1_at At3g47710 hypothetical protein LOC100192849 - 2e-3 At5g66560 phototropic-responsive NPH3 family protein O.I. H.G. S.X.
0.61 79.5 Zm.12714.1.S1_at At3g47710 vacuolar processing enzyme, beta-isozyme - 3e-7 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) O.I. H.G. S.X.
0.40 48.5 Zm.6645.1.S1_at At3g47710 NADH ubiquinone oxidoreductase B22-like subunit - 2e+0 At2g40810 AtATG18c O.I. H.G. S.X.
0.35 38.9 Zm.12082.2.A1_a_at At3g47710 hypothetical protein LOC100278326 - 4e+0 At4g21216 unknown protein O.I. H.G. S.X.
0.35 38.9 Zm.14176.2.S1_at At3g47710 - - 2e-32 At1g76810 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein O.I. H.G. S.X.
0.32 33.4 Zm.16590.1.S1_at At3g47710 pollen signalling protein with adenylyl cyclase activity - 2e+0 At3g46530 RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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