CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0350100

Gene name
Homology with Arabidopsis Similar to At3g47710: bHLH family protein (HF=4e-1)

Module size 6 genes

NF 0.87

%ile 99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os10g0350100 NM_195936.1 - - 4e-1 At3g47710 bHLH family protein O.I. H.G. S.X.
0.83 95.8 0.98 Os04g0366500 9632.m02816 - - 1e+1 At3g51060 STY1 (STYLISH 1) O.I. H.G. S.X.
0.83 95.8 0.98 Os01g0528900 9629.m03236 - - 4e+0 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.83 95.8 0.98 Os01g0521100 9629.m03165 - Hypothetical protein 3e+0 At4g10420 - O.I. H.G. S.X.
0.80 94.6 0.99 Os08g0426200 9636.m03305 - - 2e+0 At3g17580 unknown protein O.I. H.G. S.X.
0.63 82.7 0.98 Os09g0356700 9637.m01615 - - 6e-1 At4g21610 LOL2 (LSD ONE LIKE 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
73.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
59.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.2 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
9.9 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.54366.1.A1_at, orthologous to the query gene, Os10g0350100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 PtpAffx.54366.1.A1_at At3g47710 hypothetical protein - 7e-3 At4g31820 ENP (ENHANCER OF PINOID) O.I. H.G. S.X.
0.48 75.4 PtpAffx.94841.1.A1_at At3g47710 hypothetical protein - 2e+0 At1g27950 LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1) O.I. H.G. S.X.
0.42 68.6 PtpAffx.12086.2.A1_at At3g47710 hypothetical protein - 7e-14 At5g19750 peroxisomal membrane 22 kDa family protein O.I. H.G. S.X.
0.38 63.7 PtpAffx.211939.1.S1_s_at At3g47710 hypothetical protein - 1e-37 At2g04280 unknown protein O.I. H.G. S.X.
0.38 63.7 PtpAffx.11324.1.A1_at At3g47710 hypothetical protein - 5e-19 At3g24570 peroxisomal membrane 22 kDa family protein O.I. H.G. S.X.
0.36 61.6 PtpAffx.3647.1.A1_at At3g47710 hypothetical protein - 9e-5 At2g26680 - O.I. H.G. S.X.
0.28 50.5 Ptp.5533.1.S1_at At3g47710 hypothetical protein - 4e-36 At5g20720 CPN20 (CHAPERONIN 20) O.I. H.G. S.X.
0.27 47.1 Ptp.744.1.A1_at At3g47710 hypothetical protein - 2e-34 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) O.I. H.G. S.X.
0.25 43.6 PtpAffx.90782.1.S1_s_at At3g47710 hypothetical protein - 2e+0 At1g06920 OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4) O.I. H.G. S.X.
0.25 43.6 Ptp.3842.1.A1_a_at At3g47710 hypothetical protein - 1e-1 At5g13470 unknown protein O.I. H.G. S.X.
0.23 40.5 Ptp.5030.1.A1_x_at At3g47710 hypothetical protein - 4e-64 At1g77590 LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9) O.I. H.G. S.X.
0.16 26.9 Ptp.7553.1.S1_s_at At3g47710 - - 5e-85 At1g75330 OTC (ORNITHINE CARBAMOYLTRANSFERASE) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage