CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0335000

Gene name
Homology with Arabidopsis Similar to At1g33820: unknown protein (HF=1e+0)

Module size 13 genes

NF 0.61

%ile 82.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.71 Os10g0335000 NM_195802.1 - Conserved hypothetical protein 1e+0 At1g33820 unknown protein O.I. H.G. S.X.
0.83 95.8 0.87 Os02g0791400 AK062787.1 - Cytochrome oxidase c, subunit VIb family protein 6e+0 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.79 93.6 0.83 Os07g0174900 9635.m00735 - Plant lipid transfer protein/Par allergen familyprotein 5e+0 At5g26890 unknown protein O.I. H.G. S.X.
0.77 93.1 0.81 Os09g0329700 9637.m01341 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-1 At5g14860 transferase, transferring glycosyl groups O.I. H.G. S.X.
0.74 91.4 0.80 Os01g0788400 AK109763.1 - Pectinesterase (EC 3.1.1.11) (Pectinmethylesterase) (PE) 2e-7 At3g59010 pectinesterase family protein O.I. H.G. S.X.
0.67 87.2 0.83 Os01g0127000 AK105526.1 - Multicopper oxidase, type 1 domain containingprotein 4e+0 At5g02270 ATNAP9 O.I. H.G. S.X.
0.61 81.2 0.85 Os06g0169900 CB096301 - Hypothetical protein 5e-1 At5g14320 30S ribosomal protein S13, chloroplast (CS13) O.I. H.G. S.X.
0.53 71.3 0.81 Os03g0195800 AK103007.1 - - 4e-13 At1g78000 SULTR1 O.I. H.G. S.X.
0.51 68.7 0.82 Os06g0199000 AK106381.1 - Glycine-rich cell wall structural protein 2precursor 1e-4 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.45 58.8 0.82 Os12g0455000 AK111239.1 - Conserved hypothetical protein 1e+0 At4g09450 myb family transcription factor O.I. H.G. S.X.
0.41 52.4 0.84 Os11g0428800 CF291095 - Plastocyanin-like domain containing protein 1e+1 At5g35470 unknown protein O.I. H.G. S.X.
0.41 52.4 0.87 Os01g0347600 NM_183998.1 - Ervatamin B (EC 3.4.22.-) (ERV-B) 4e-2 At1g29090 peptidase C1A papain family protein O.I. H.G. S.X.
0.38 46.9 0.84 Os09g0564200 9637.m03335 - Peptidase C1A, papain family protein 1e-4 At1g06260 cysteine proteinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
31.0 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.6 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.3 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0008272 The directed movement of sulfate into, out of, within or between cells.
0.063 1 GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
0.044 1 GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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