CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0326200

Gene name
Homology with Arabidopsis Similar to At1g70110: lectin protein kinase family protein (HF=1e-5)

Module size 7 genes

NF 0.53

%ile 70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.98 Os10g0326200 NM_195709.1 - - 1e-5 At1g70110 lectin protein kinase family protein O.I. H.G. S.X.
0.71 89.6 0.98 Os04g0519500 9632.m04208 - - 3e+0 At5g11440 CID5 O.I. H.G. S.X.
0.56 76.3 0.98 Os03g0690100 9631.m04711 - - 2e+0 At3g16960 - O.I. H.G. S.X.
0.55 73.7 0.99 Os11g0258800 9639.m01410 - - 2e+0 At3g58850 PAR2 (PHY RAPIDLY REGULATED 2) O.I. H.G. S.X.
0.50 68.0 0.98 Os05g0135100 9633.m00373 - Protein kinase domain containing protein 4e-3 At1g79670 RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1) O.I. H.G. S.X.
0.38 46.9 0.98 Os04g0312000 9632.m02307 - Disease resistance protein family protein 5e+0 At4g12850 far-red impaired responsive family protein / FAR1 family protein O.I. H.G. S.X.
0.38 46.9 0.98 Os04g0425000 9632.m03337 - - 5e+0 At4g18205 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.4 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.7 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.7 98.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.105 1 GO:0009405 The set of specific processes that generate the ability of an organism to cause disease in another.
0.061 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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