CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0320100

Gene name
Homology with Arabidopsis Similar to At5g07990: TT7 (TRANSPARENT TESTA 7) (HF=6e-2)

Module size 6 genes

NF 0.91

%ile 99.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.92 Os10g0320100 AK064736.1 - Flavonoid 3'-monooxygenase (EC 1.14.13.21)(Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2) 6e-2 At5g07990 TT7 (TRANSPARENT TESTA 7) O.I. H.G. S.X.
0.91 98.9 0.93 Os02g0697400 AK105636.1 - 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2)(4-coumaroyl-CoA synthase 2) 8e-5 At1g65060 4CL3 O.I. H.G. S.X.
0.83 95.8 0.92 Os06g0288200 AK071127.1 - Hypothetical protein 8e-1 At2g47400 CP12-1 O.I. H.G. S.X.
0.83 95.8 0.93 Os06g0102100 AK099468.1 - Cytochrome P450 family protein 1e+0 At5g46020 unknown protein O.I. H.G. S.X.
0.83 95.8 0.93 Os07g0510500 AK068586.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 4e-3 At3g21800 UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8) O.I. H.G. S.X.
0.77 93.1 0.93 Os02g0589000 AK066288.1 - Lecithin:cholesterol acyltransferase familyprotein 8e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.9 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.3 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.044 1 GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

Inter-species module comparison

A co-expression module including the grape gene, 1614285_at, orthologous to the query gene, Os10g0320100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 68.8 1614285_at At5g07990 hypothetical LOC100242120 - 2e-3 At5g24960 CYP71A14 O.I. H.G. S.X.
0.32 43.1 1614374_s_at At5g07990 similar to binding - 2e-8 At2g29670 binding O.I. H.G. S.X.
0.29 37.7 1613188_at At5g07990 hypothetical protein LOC100267346 - 1e-6 At1g69830 AMY3 (ALPHA-AMYLASE-LIKE 3) O.I. H.G. S.X.
0.28 37.7 1617588_at At5g07990 hypothetical protein LOC100267586 - 8e-1 At5g43460 lesion inducing protein-related O.I. H.G. S.X.
0.26 32.0 1615540_s_at At5g07990 hypothetical protein LOC100263051 - 4e-1 At1g65230 unknown protein O.I. H.G. S.X.
0.24 28.7 1610738_at At5g07990 hypothetical protein LOC100267811 - 2e-2 At5g27990 unknown protein O.I. H.G. S.X.
0.24 28.7 1620628_at At5g07990 neutral invertase - 2e-37 At1g56560 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative O.I. H.G. S.X.
0.21 24.0 1608860_at At5g07990 hypothetical protein LOC100241980 - 4e+0 At2g24390 - O.I. H.G. S.X.
0.21 24.0 1609824_at At5g07990 hypothetical protein LOC100258718 - 5e-1 At1g66130 oxidoreductase N-terminal domain-containing protein O.I. H.G. S.X.
0.20 22.4 1619891_at At5g07990 hypothetical protein LOC100260426 - 2e+0 At2g37060 NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8) O.I. H.G. S.X.
0.17 18.2 1609762_s_at At5g07990 hypothetical protein LOC100257013 - 4e-19 At1g16270 protein kinase family protein O.I. H.G. S.X.
0.16 16.7 1608361_at At5g07990 hypothetical protein LOC100264929 - 3e-18 At3g26580 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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