CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0195600

Gene name
Homology with Arabidopsis Similar to At2g42380: bZIP transcription factor family protein (HF=4e+0)

Module size 6 genes

NF 0.12

%ile 9.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.78 Os10g0195600 AK100207.1 - Transferase family protein 4e+0 At2g42380 bZIP transcription factor family protein O.I. H.G. S.X.
0.50 68.0 0.80 Os02g0178700 AK110943.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 5e-1 At2g40475 unknown protein O.I. H.G. S.X.
0.21 17.9 0.78 Os03g0797800 AK059619.1 - AUX/IAA protein family protein 1e-1 At3g15540 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) O.I. H.G. S.X.
0.13 8.2 0.77 Os01g0706700 AK072738.1 - - 5e-9 At1g73020 unknown protein O.I. H.G. S.X.
0.07 3.7 0.76 Os03g0859100 AK060992.1 - Lipolytic enzyme, G-D-S-L family protein 2e-1 At5g40630 ubiquitin family protein O.I. H.G. S.X.
0.04 2.0 0.77 Os11g0528400 AK069554.1 - Conserved hypothetical protein 4e-9 At3g19340 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.2 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.6 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.7 97.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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