CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0166300

Gene name
Homology with Arabidopsis Similar to At3g44620: protein tyrosine phosphatase (HF=2e+0)

Module size 43 genes

NF 0.23

%ile 21.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.6 0.77 Os10g0166300 AK102437.1 - - 2e+0 At3g44620 protein tyrosine phosphatase O.I. H.G. S.X.
0.46 60.9 0.86 Os07g0626800 AK066185.1 - Amine oxidase family protein 8e-1 At3g09580 amine oxidase family protein O.I. H.G. S.X.
0.44 58.1 0.86 Os03g0139000 AK103850.1 - Hypothetical protein 9e+0 At5g24930 zinc finger (B-box type) family protein O.I. H.G. S.X.
0.44 58.1 0.92 Os03g0336000 AK100067.1 - TPR-like domain containing protein 5e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.42 53.9 0.87 Os01g0382700 AK071607.1 - Conserved hypothetical protein 5e-20 At5g27290 unknown protein O.I. H.G. S.X.
0.40 51.1 0.86 Os05g0460600 AK067655.1 - 'GTP cyclohydrolaseII/3,4-dihydroxy-2-butanone-4-phosphate synthase' 3e-4 At5g59750 riboflavin biosynthesis protein, putative O.I. H.G. S.X.
0.39 48.3 0.88 Os01g0607800 AK062372.1 - Protein prenyltransferase domain containingprotein 3e-1 At4g37170 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.38 46.9 0.86 Os06g0731300 9634.m05013 - Surface protein from Gram-positive cocci, anchorregion domain containing protein 1e+0 At5g63150 unknown protein O.I. H.G. S.X.
0.34 40.0 0.91 Os03g0425000 AK109392.2 - Conserved hypothetical protein 2e-2 At2g31890 RAP O.I. H.G. S.X.
0.34 40.0 0.92 Os01g0940600 AK070587.1 - Conserved hypothetical protein 2e+0 At5g28610 - O.I. H.G. S.X.
0.34 40.0 0.83 Os04g0323500 AK061480.1 - Hypothetical protein 8e-2 At1g27710 glycine-rich protein O.I. H.G. S.X.
0.33 38.8 0.88 Os03g0860600 AK071828.1 - - 1e-2 At3g61400 2-oxoglutarate-dependent dioxygenase, putative O.I. H.G. S.X.
0.32 36.3 0.83 Os05g0579500 AK121528.1 - Conserved hypothetical protein 5e+0 At5g61412 unknown protein O.I. H.G. S.X.
0.32 36.3 0.92 Os04g0422000 AK106080.1 - PAP fibrillin family protein 3e+0 At1g21000 zinc-binding family protein O.I. H.G. S.X.
0.31 34.5 0.90 Os11g0425300 AK060683.1 - Conserved hypothetical protein 9e-1 At2g41530 SFGH (S-FORMYLGLUTATHIONE HYDROLASE) O.I. H.G. S.X.
0.31 34.5 0.86 Os04g0106400 AK105953.1 - D-isomer specific 2-hydroxyacid dehydrogenase,catalytic region domain containing protein 2e+0 At3g20890 RNA binding / nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.29 31.1 0.86 Os01g0349600 AK066217.1 - Conserved hypothetical protein 3e+0 At4g24275 - O.I. H.G. S.X.
0.29 31.1 0.92 Os01g0889800 AK070087.1 - Rhodanese-like domain containing protein 2e-1 At3g25480 rhodanese-like domain-containing protein O.I. H.G. S.X.
0.28 31.1 0.90 Os03g0781400 AK071970.1 - - 7e-1 At1g08580 unknown protein O.I. H.G. S.X.
0.28 31.1 0.90 Os02g0831200 AK061847.1 - Protein of unknown function DUF177 domaincontaining protein 6e-1 At3g12510 unknown protein O.I. H.G. S.X.
0.28 31.1 0.90 Os05g0241200 AK073395.1 - Triose phosphate/phosphate translocator,chloroplast precursor (CTPT) 8e-7 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) O.I. H.G. S.X.
0.27 27.5 0.92 Os05g0500400 AK110277.1 - Conserved hypothetical protein 6e-1 At5g11680 unknown protein O.I. H.G. S.X.
0.26 25.6 0.91 Os06g0116400 AK105979.1 - High-affinity nickel-transporter family protein 2e-1 At4g35080 high-affinity nickel-transport family protein O.I. H.G. S.X.
0.26 25.6 0.89 Os12g0616600 AK067918.1 - Protease sppA, chloroplast precursor (EC 3.4.21.-) 7e-4 At4g18370 DEG5 (DEGP PROTEASE 5) O.I. H.G. S.X.
0.24 22.4 0.90 Os03g0190100 AK066332.1 - UbiA prenyltransferase family protein 2e-11 At1g60600 ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4) O.I. H.G. S.X.
0.23 21.2 0.90 Os09g0531100 AK110919.1 - Conserved hypothetical protein 5e-8 At2g21385 unknown protein O.I. H.G. S.X.
0.23 21.2 0.87 Os10g0350800 NM_195943.1 - Hypothetical protein 2e+0 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.23 21.2 0.91 Os03g0699300 AK120407.1 - Adenylosuccinate synthetase, chloroplast precursor(EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) 1e-18 At3g57610 ADSS (ADENYLOSUCCINATE SYNTHASE) O.I. H.G. S.X.
0.23 21.2 0.85 Os11g0482400 AK066023.1 - TPR-like domain containing protein 3e-1 At5g46460 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.22 19.4 0.90 Os03g0747700 AK058795.1 - Conserved hypothetical protein 4e-1 At5g65880 unknown protein O.I. H.G. S.X.
0.22 19.4 0.91 Os03g0126300 AY346336.1 - SAM (and some other nucleotide) binding motifdomain containing protein 3e-2 At1g75550 glycine-rich protein O.I. H.G. S.X.
0.22 19.4 0.92 Os01g0705300 AK102719.1 - Conserved hypothetical protein 1e-1 At1g60320 Toll-Interleukin-Resistance (TIR) domain-containing protein O.I. H.G. S.X.
0.21 17.9 0.85 Os08g0300000 CF296703 - Conserved hypothetical protein 7e+0 At5g03120 unknown protein O.I. H.G. S.X.
0.20 16.5 0.92 Os07g0133700 AU055734 - Peptidylprolyl isomerase, FKBP-type domaincontaining protein 4e-27 At5g13410 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.20 16.5 0.86 Os09g0123500 AK100990.1 - TPR-like domain containing protein 9e-1 At5g40595 unknown protein O.I. H.G. S.X.
0.19 15.1 0.87 Os07g0164200 AK107096.1 - Conserved hypothetical protein 4e+0 At3g27980 pectinesterase family protein O.I. H.G. S.X.
0.18 13.7 0.89 Os12g0562100 AK064831.1 - Conserved hypothetical protein 1e+0 At5g53110 - O.I. H.G. S.X.
0.14 9.3 0.87 Os01g0967900 AK058521.1 - - 6e-11 At5g04710 aspartyl aminopeptidase, putative O.I. H.G. S.X.
0.13 8.2 0.90 Os12g0564400 AK059949.1 - Thylakoid lumenal 21.5 kDa protein, chloroplastprecursor 1e-10 At4g15510 photosystem II reaction center PsbP family protein O.I. H.G. S.X.
0.13 8.2 0.87 Os06g0484500 AK108194.1 - Hypothetical protein 6e+0 At2g01340 unknown protein O.I. H.G. S.X.
0.09 4.9 0.84 Os10g0213700 AK063872.1 - Conserved hypothetical protein 1e+0 At1g15900 unknown protein O.I. H.G. S.X.
0.08 4.2 0.86 Os04g0312100 AK120695.1 - Plant specific of unknown function DUF860 familyprotein 6e-2 At1g15230 unknown protein O.I. H.G. S.X.
0.07 3.7 0.82 Os03g0786400 AK067369.1 - Zn-finger, C2H2 type domain containing protein 2e-4 At1g54215 proline-rich family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.95	99.6	0.77	Os10g0166300	AK102437.1	-	-	2e+0	At3g44620	protein tyrosine phosphatase	O.I.	H.G.	S.X.
0.46	60.9	0.86	Os07g0626800	AK066185.1	-	Amine oxidase family protein	8e-1	At3g09580	amine oxidase family protein	O.I.	H.G.	S.X.
0.44	58.1	0.86	Os03g0139000	AK103850.1	-	Hypothetical protein	9e+0	At5g24930	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.
0.44	58.1	0.92	Os03g0336000	AK100067.1	-	TPR-like domain containing protein	5e+0	At5g23680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.
0.42	53.9	0.87	Os01g0382700	AK071607.1	-	Conserved hypothetical protein	5e-20	At5g27290	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.86	Os05g0460600	AK067655.1	-	'GTP cyclohydrolaseII/3,4-dihydroxy-2-butanone-4-phosphate synthase'	3e-4	At5g59750	riboflavin biosynthesis protein, putative	O.I.	H.G.	S.X.
0.39	48.3	0.88	Os01g0607800	AK062372.1	-	Protein prenyltransferase domain containingprotein	3e-1	At4g37170	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.38	46.9	0.86	Os06g0731300	9634.m05013	-	Surface protein from Gram-positive cocci, anchorregion domain containing protein	1e+0	At5g63150	unknown protein	O.I.	H.G.	S.X.
0.34	40.0	0.91	Os03g0425000	AK109392.2	-	Conserved hypothetical protein	2e-2	At2g31890	RAP	O.I.	H.G.	S.X.
0.34	40.0	0.92	Os01g0940600	AK070587.1	-	Conserved hypothetical protein	2e+0	At5g28610	-	O.I.	H.G.	S.X.
0.34	40.0	0.83	Os04g0323500	AK061480.1	-	Hypothetical protein	8e-2	At1g27710	glycine-rich protein	O.I.	H.G.	S.X.
0.33	38.8	0.88	Os03g0860600	AK071828.1	-	-	1e-2	At3g61400	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.
0.32	36.3	0.83	Os05g0579500	AK121528.1	-	Conserved hypothetical protein	5e+0	At5g61412	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	0.92	Os04g0422000	AK106080.1	-	PAP fibrillin family protein	3e+0	At1g21000	zinc-binding family protein	O.I.	H.G.	S.X.
0.31	34.5	0.90	Os11g0425300	AK060683.1	-	Conserved hypothetical protein	9e-1	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	O.I.	H.G.	S.X.
0.31	34.5	0.86	Os04g0106400	AK105953.1	-	D-isomer specific 2-hydroxyacid dehydrogenase,catalytic region domain containing protein	2e+0	At3g20890	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.29	31.1	0.86	Os01g0349600	AK066217.1	-	Conserved hypothetical protein	3e+0	At4g24275	-	O.I.	H.G.	S.X.
0.29	31.1	0.92	Os01g0889800	AK070087.1	-	Rhodanese-like domain containing protein	2e-1	At3g25480	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.
0.28	31.1	0.90	Os03g0781400	AK071970.1	-	-	7e-1	At1g08580	unknown protein	O.I.	H.G.	S.X.
0.28	31.1	0.90	Os02g0831200	AK061847.1	-	Protein of unknown function DUF177 domaincontaining protein	6e-1	At3g12510	unknown protein	O.I.	H.G.	S.X.
0.28	31.1	0.90	Os05g0241200	AK073395.1	-	Triose phosphate/phosphate translocator,chloroplast precursor (CTPT)	8e-7	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.
0.27	27.5	0.92	Os05g0500400	AK110277.1	-	Conserved hypothetical protein	6e-1	At5g11680	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.91	Os06g0116400	AK105979.1	-	High-affinity nickel-transporter family protein	2e-1	At4g35080	high-affinity nickel-transport family protein	O.I.	H.G.	S.X.
0.26	25.6	0.89	Os12g0616600	AK067918.1	-	Protease sppA, chloroplast precursor (EC 3.4.21.-)	7e-4	At4g18370	DEG5 (DEGP PROTEASE 5)	O.I.	H.G.	S.X.
0.24	22.4	0.90	Os03g0190100	AK066332.1	-	UbiA prenyltransferase family protein	2e-11	At1g60600	ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4)	O.I.	H.G.	S.X.
0.23	21.2	0.90	Os09g0531100	AK110919.1	-	Conserved hypothetical protein	5e-8	At2g21385	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	0.87	Os10g0350800	NM_195943.1	-	Hypothetical protein	2e+0	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.
0.23	21.2	0.91	Os03g0699300	AK120407.1	-	Adenylosuccinate synthetase, chloroplast precursor(EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase)	1e-18	At3g57610	ADSS (ADENYLOSUCCINATE SYNTHASE)	O.I.	H.G.	S.X.
0.23	21.2	0.85	Os11g0482400	AK066023.1	-	TPR-like domain containing protein	3e-1	At5g46460	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.22	19.4	0.90	Os03g0747700	AK058795.1	-	Conserved hypothetical protein	4e-1	At5g65880	unknown protein	O.I.	H.G.	S.X.
0.22	19.4	0.91	Os03g0126300	AY346336.1	-	SAM (and some other nucleotide) binding motifdomain containing protein	3e-2	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.
0.22	19.4	0.92	Os01g0705300	AK102719.1	-	Conserved hypothetical protein	1e-1	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.
0.21	17.9	0.85	Os08g0300000	CF296703	-	Conserved hypothetical protein	7e+0	At5g03120	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	0.92	Os07g0133700	AU055734	-	Peptidylprolyl isomerase, FKBP-type domaincontaining protein	4e-27	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.20	16.5	0.86	Os09g0123500	AK100990.1	-	TPR-like domain containing protein	9e-1	At5g40595	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	0.87	Os07g0164200	AK107096.1	-	Conserved hypothetical protein	4e+0	At3g27980	pectinesterase family protein	O.I.	H.G.	S.X.
0.18	13.7	0.89	Os12g0562100	AK064831.1	-	Conserved hypothetical protein	1e+0	At5g53110	-	O.I.	H.G.	S.X.
0.14	9.3	0.87	Os01g0967900	AK058521.1	-	-	6e-11	At5g04710	aspartyl aminopeptidase, putative	O.I.	H.G.	S.X.
0.13	8.2	0.90	Os12g0564400	AK059949.1	-	Thylakoid lumenal 21.5 kDa protein, chloroplastprecursor	1e-10	At4g15510	photosystem II reaction center PsbP family protein	O.I.	H.G.	S.X.
0.13	8.2	0.87	Os06g0484500	AK108194.1	-	Hypothetical protein	6e+0	At2g01340	unknown protein	O.I.	H.G.	S.X.
0.09	4.9	0.84	Os10g0213700	AK063872.1	-	Conserved hypothetical protein	1e+0	At1g15900	unknown protein	O.I.	H.G.	S.X.
0.08	4.2	0.86	Os04g0312100	AK120695.1	-	Plant specific of unknown function DUF860 familyprotein	6e-2	At1g15230	unknown protein	O.I.	H.G.	S.X.
0.07	3.7	0.82	Os03g0786400	AK067369.1	-	Zn-finger, C2H2 type domain containing protein	2e-4	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.5 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.2 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.2 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
19.5	99.1	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.2	98.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.2	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8	97.8	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.045 1 GO:0015675 The directed movement of nickel (Ni) ions into, out of, within or between cells.
0.044 1 GO:0009052 The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P.
0.043 1 GO:0006164 The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety.

SF	Genes	GO ID	Process Name
0.045	1	GO:0015675	The directed movement of nickel (Ni) ions into, out of, within or between cells.
0.044	1	GO:0009052	The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P.
0.043	1	GO:0006164	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Os10g0166300
Gene name
Homology with Arabidopsis	Similar to At3g44620: protein tyrosine phosphatase (HF=2e+0)
Module size	43 genes
NF	0.23
%ile	21.6

Co-expression analysis

Gene ID Os10g0166300 Gene name Homology with ArabidopsisSimilar to At3g44620: protein tyrosine phosphatase (HF=2e+0) Module size 43 genes NF 0.23 %ile 21.6

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0166300

Gene name
Homology with Arabidopsis Similar to At3g44620: protein tyrosine phosphatase (HF=2e+0)

Module size 43 genes

NF 0.23

%ile 21.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays