CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0165300

Gene name
Homology with Arabidopsis Similar to At2g45580: CYP76C3 (HF=1e-2)

Module size 11 genes

NF 0.56

%ile 76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.84 Os10g0165300 NM_195010.1 - Cytochrome P450 family protein 1e-2 At2g45580 CYP76C3 O.I. H.G. S.X.
0.70 88.4 0.88 Os04g0588700 AK099941.1 - ABC transporter, transmembrane region domaincontaining protein 9e-6 At3g59140 ATMRP14 O.I. H.G. S.X.
0.62 81.5 0.85 Os01g0680200 AK121881.1 - - 2e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.61 81.2 0.85 Os07g0642200 AK058442.1 - Lipolytic enzyme, G-D-S-L family protein 1e-2 At1g28590 lipase, putative O.I. H.G. S.X.
0.59 78.0 0.89 Os12g0454800 AY572461.1 - Histidine kinase 7e-3 At5g10530 lectin protein kinase, putative O.I. H.G. S.X.
0.57 77.0 0.86 Os01g0740500 9629.m05236 - Transferrin receptor-like dimerisation regiondomain containing protein 2e-5 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) O.I. H.G. S.X.
0.55 73.7 0.88 Os07g0280200 AK108656.1 - AMP-dependent synthetase and ligase domaincontaining protein 2e-2 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein O.I. H.G. S.X.
0.52 69.6 0.87 Os02g0758800 AK071537.1 - Plastocyanin-like domain containing protein 5e-4 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.
0.50 68.0 0.88 Os11g0708100 AK060544.1 - Laccase (EC 1.10.3.2) (Fragment) 1e-8 At5g01190 LAC10 (laccase 10) O.I. H.G. S.X.
0.43 55.4 0.87 Os12g0490000 CA762266 - Mitochodrial transcription terminationfactor-related family protein 5e+0 At4g08170 inositol 1,3,4-trisphosphate 5/6-kinase family protein O.I. H.G. S.X.
0.36 44.0 0.88 Os02g0722400 AK070030.1 - Amino acid transporter c (Fragment) 2e-4 At5g23810 AAP7 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.5 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.038 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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