Co-expression analysis

Gene ID Os10g0151100
Gene name
Homology with ArabidopsisSimilar to At2g05940: protein kinase, putative (HF=3e-4)
Module size 6 genes
NF 0.01
%ile 0.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.85Os10g01511009638.m00516-Protein kinase domain containing protein3e-4At2g05940protein kinase, putativeO.I.H.G.S.X.
0.6787.20.88Os10g04398009638.m02609-Cytochrome P450 family protein1e-2At3g26180CYP71B20O.I.H.G.S.X.
0.6079.70.84Os11g0112200AK108385.1-Cationic peroxidase 1 precursor (EC 1.11.1.7)(PNPC1)4e-8At1g68850peroxidase, putativeO.I.H.G.S.X.
0.5068.00.91Os11g05146009639.m02865-Somatic embryogenesis receptor-like kinase 28e+0At5g04090unknown proteinO.I.H.G.S.X.
0.010.50.85Os03g0732000BM419374-LYTB-like protein precursor1e+0At1g34350unknown proteinO.I.H.G.S.X.
-0.10.85Os11g04751009639.m02579--4e-1At2g16890UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.299.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
13.898.5GSM159172Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO
10.098.0GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.797.8GSM159173Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO
7.597.5GSM35713714-day-old seedling, heat shock, rep 3GSE14275Expression data for heat shock in rice seedlingsLink to GEO
6.997.3GSM35713614-day-old seedling, heat shock, rep 2GSE14275Expression data for heat shock in rice seedlingsLink to GEO
6.997.3GSM35713514-day-old seedling, heat shock, rep 1GSE14275Expression data for heat shock in rice seedlingsLink to GEO
6.597.2GSM302922seedling_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
5.496.8GSM149410Rice Azucena 1ppm Arsenate Rep3GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
5.096.6GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0221GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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