CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0149700

Gene name
Homology with Arabidopsis Similar to At1g18170: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (HF=4e-2)

Module size 17 genes

NF 0.24

%ile 23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.4 0.96 Os10g0149700 AK064371.1 - - 4e-2 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.44 58.1 0.97 Os04g0386000 9632.m03011 - - 4e+0 At2g19802 unknown protein O.I. H.G. S.X.
0.42 53.9 0.97 Os05g0148400 AK108236.1 - Conserved hypothetical protein 2e+0 At1g75080 BZR1 (BRASSINAZOLE-RESISTANT 1) O.I. H.G. S.X.
0.37 45.0 0.97 Os10g0171400 9638.m00781 - Cytochrome P450 family protein 9e-1 At2g37480 unknown protein O.I. H.G. S.X.
0.31 34.5 0.98 Os03g0335700 9631.m02175 - - 1e+0 At1g74410 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.30 32.7 0.97 Os10g0148300 9638.m00490 - - 2e+0 At3g22425 IGPD O.I. H.G. S.X.
0.29 31.1 0.98 Os06g0308550 9634.m01983 - - 2e+0 At1g11850 unknown protein O.I. H.G. S.X.
0.29 31.1 0.97 Os08g0242300 9636.m01438 - - 5e-1 At2g42540 COR15A (COLD-REGULATED 15A) O.I. H.G. S.X.
0.29 31.1 0.97 Os10g0387400 NM_196262.1 - - 1e+1 At5g23950 C2 domain-containing protein O.I. H.G. S.X.
0.28 31.1 0.98 Os01g0754300 AK108081.1 - Hypothetical protein 3e+0 At4g36500 unknown protein O.I. H.G. S.X.
0.26 25.6 0.97 Os02g0499300 AK106994.1 - Conserved hypothetical protein 3e+0 At3g23220 DNA binding / transcription factor O.I. H.G. S.X.
0.24 22.4 0.98 Os11g0268200 9639.m01527 - - 2e+1 At5g19172 - O.I. H.G. S.X.
0.19 15.1 0.98 Os12g0203400 9640.m00961 - - 4e-1 At4g18890 brassinosteroid signalling positive regulator-related O.I. H.G. S.X.
0.13 8.2 0.98 Os02g0159050 9630.m00572 - - 2e+0 At5g49490 AGL83 (AGAMOUS-LIKE 83) O.I. H.G. S.X.
0.10 5.7 0.98 Os01g0536950 9629.m03321 - - 5e+0 At3g12830 auxin-responsive family protein O.I. H.G. S.X.
0.10 5.7 0.99 Os12g0606000 9640.m04040 - Protein of unknown function DUF26 domaincontaining protein 4e-4 At5g06740 lectin protein kinase family protein O.I. H.G. S.X.
0.07 3.7 0.97 Os06g0542800 9634.m03318 - - 8e-3 At4g34560 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.94	99.4	0.96	Os10g0149700	AK064371.1	-	-	4e-2	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os04g0386000	9632.m03011	-	-	4e+0	At2g19802	unknown protein	O.I.	H.G.	S.X.
0.42	53.9	0.97	Os05g0148400	AK108236.1	-	Conserved hypothetical protein	2e+0	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	O.I.	H.G.	S.X.
0.37	45.0	0.97	Os10g0171400	9638.m00781	-	Cytochrome P450 family protein	9e-1	At2g37480	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os03g0335700	9631.m02175	-	-	1e+0	At1g74410	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.30	32.7	0.97	Os10g0148300	9638.m00490	-	-	2e+0	At3g22425	IGPD	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os06g0308550	9634.m01983	-	-	2e+0	At1g11850	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.97	Os08g0242300	9636.m01438	-	-	5e-1	At2g42540	COR15A (COLD-REGULATED 15A)	O.I.	H.G.	S.X.
0.29	31.1	0.97	Os10g0387400	NM_196262.1	-	-	1e+1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.
0.28	31.1	0.98	Os01g0754300	AK108081.1	-	Hypothetical protein	3e+0	At4g36500	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.97	Os02g0499300	AK106994.1	-	Conserved hypothetical protein	3e+0	At3g23220	DNA binding / transcription factor	O.I.	H.G.	S.X.
0.24	22.4	0.98	Os11g0268200	9639.m01527	-	-	2e+1	At5g19172	-	O.I.	H.G.	S.X.
0.19	15.1	0.98	Os12g0203400	9640.m00961	-	-	4e-1	At4g18890	brassinosteroid signalling positive regulator-related	O.I.	H.G.	S.X.
0.13	8.2	0.98	Os02g0159050	9630.m00572	-	-	2e+0	At5g49490	AGL83 (AGAMOUS-LIKE 83)	O.I.	H.G.	S.X.
0.10	5.7	0.98	Os01g0536950	9629.m03321	-	-	5e+0	At3g12830	auxin-responsive family protein	O.I.	H.G.	S.X.
0.10	5.7	0.99	Os12g0606000	9640.m04040	-	Protein of unknown function DUF26 domaincontaining protein	4e-4	At5g06740	lectin protein kinase family protein	O.I.	H.G.	S.X.
0.07	3.7	0.97	Os06g0542800	9634.m03318	-	-	8e-3	At4g34560	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.8 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.0 98.5 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
13.7 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.0 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
61.6	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.8	99.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.0	98.5	GSM195228	Embryo	GSE7951	Genome-wide gene expression profiling of rice stigma
13.7	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6	97.9	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.0	97.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os10g0149700
Gene name
Homology with Arabidopsis	Similar to At1g18170: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (HF=4e-2)
Module size	17 genes
NF	0.24
%ile	23.4

Co-expression analysis

Gene ID Os10g0149700 Gene name Homology with ArabidopsisSimilar to At1g18170: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (HF=4e-2) Module size 17 genes NF 0.24 %ile 23.4

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0149700

Gene name
Homology with Arabidopsis Similar to At1g18170: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (HF=4e-2)

Module size 17 genes

NF 0.24

%ile 23.4

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays