CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0148400

Gene name
Homology with Arabidopsis Similar to At5g03710: unknown protein (HF=2e-1)

Module size 12 genes

NF 0.14

%ile 12.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.79 Os10g0148400 CB679458 - TGF-beta receptor, type I/II extracellular regionfamily protein 2e-1 At5g03710 unknown protein O.I. H.G. S.X.
0.33 38.8 0.87 Os04g0623200 AK105231.1 - Conserved hypothetical protein 4e-1 At4g29230 anac075 (Arabidopsis NAC domain containing protein 75) O.I. H.G. S.X.
0.32 36.3 0.87 Os08g0375400 AK108186.1 - Plant disease resistance response protein familyprotein 6e+0 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) O.I. H.G. S.X.
0.29 31.1 0.85 Os06g0289900 CR280016 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 8e-1 At2g37950 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.29 31.1 0.91 Os11g0635500 AK067543.1 - Cytochrome P450 family protein 4e-3 At5g06380 unknown protein O.I. H.G. S.X.
0.24 22.4 0.88 Os04g0101400 AK100972.1 - Cytochrome P450 family protein 1e-2 At5g06900 CYP93D1 O.I. H.G. S.X.
0.18 13.7 0.90 Os01g0126200 AK121464.1 - Spore coat protein-like protein 7e-2 At1g71040 LPR2 (Low Phosphate Root2) O.I. H.G. S.X.
0.17 12.6 0.88 Os02g0589400 9630.m03609 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At5g47080 CKB1 O.I. H.G. S.X.
0.16 11.3 0.89 Os07g0414000 AK060507.1 - Transferase family protein 3e+0 At4g22513 - O.I. H.G. S.X.
0.15 10.3 0.88 Os10g0539700 AK120628.1 - Conserved hypothetical protein 1e+0 At2g11890 adenylate cyclase O.I. H.G. S.X.
0.11 6.5 0.93 Os07g0558300 AK120618.1 - Inositol monophosphatase family protein 5e-2 At4g05090 inositol monophosphatase family protein O.I. H.G. S.X.
0.04 2.0 0.87 Os09g0460400 AK067180.1 - Esterase/lipase/thioesterase domain containingprotein 9e+0 At5g06570 hydrolase O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.1 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.1 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.7 98.4 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
11.4 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.059 1 GO:0009620 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.
0.031 1 GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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