CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0135300

Gene name
Homology with Arabidopsis Similar to At2g21060: ATGRP2B (GLYCINE-RICH PROTEIN 2B) (HF=2e-2)

Module size 19 genes

NF 0.44

%ile 56.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.68 87.5 0.96 Os10g0135300 AK072221.1 - Cyclin-like F-box domain containing protein 2e-2 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.
0.60 79.7 0.97 Os01g0170100 BI808778 - D111/G-patch domain containing protein 9e-1 At1g22180 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein O.I. H.G. S.X.
0.56 76.3 0.97 Os02g0658400 AK120166.1 - Remorin, C-terminal region domain containingprotein 8e-1 At4g17670 senescence-associated protein-related O.I. H.G. S.X.
0.56 76.3 0.97 Os02g0780800 9630.m05348 - Helicase, C-terminal domain containing protein 3e-1 At2g34480 60S ribosomal protein L18A (RPL18aB) O.I. H.G. S.X.
0.54 71.9 0.97 Os10g0358700 AK099994.1 - TPR-like domain containing protein 2e+0 At1g29724 protein binding O.I. H.G. S.X.
0.50 68.0 0.96 Os03g0775400 AK107354.1 - TPR-like domain containing protein 1e+0 At3g61170 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.50 68.0 0.97 Os03g0428000 AK062841.1 - Conserved hypothetical protein 3e-2 At1g28540 unknown protein O.I. H.G. S.X.
0.47 62.3 0.97 Os10g0145100 AK073677.1 - Cyclin-like F-box domain containing protein 2e-1 At5g64690 neurofilament triplet H protein-related O.I. H.G. S.X.
0.44 58.1 0.97 Os02g0292600 AK106688.1 - Lipolytic enzyme, G-D-S-L family protein 1e-2 At1g74460 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.43 55.4 0.97 Os01g0528100 NM_193162.1 - Winged helix DNA-binding domain containing protein 1e-1 At4g18940 cyclic phosphodiesterase, putative O.I. H.G. S.X.
0.42 53.9 0.98 Os12g0596000 AK073530.1 - Lipoate-protein ligase B 7e-2 At1g47580 lipoyltransferase, putative O.I. H.G. S.X.
0.40 51.1 0.97 Os02g0301000 AK063049.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 7e-8 At1g01350 nucleic acid binding / protein binding / zinc ion binding O.I. H.G. S.X.
0.40 51.1 0.97 Os10g0479200 NM_197022.1 - Protein prenyltransferase domain containingprotein 1e+0 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) O.I. H.G. S.X.
0.39 48.3 0.97 Os07g0613300 AK106898.1 - Exportin-t 3e-2 At2g23310 ATRER1C1 O.I. H.G. S.X.
0.38 46.9 0.98 Os11g0587100 9639.m03410 - TPR-like domain containing protein 3e-1 At2g36980 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.35 41.7 0.97 Os04g0602700 9632.m04960 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e-2 At1g31600 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.29 31.1 0.97 Os10g0487600 AK061153.1 - Conserved hypothetical protein 3e+0 At5g56710 60S ribosomal protein L31 (RPL31C) O.I. H.G. S.X.
0.28 31.1 0.97 Os03g0842400 AK107097.1 - Conserved hypothetical protein 4e+0 At2g45190 AFO (ABNORMAL FLORAL ORGANS) O.I. H.G. S.X.
0.22 19.4 0.98 Os05g0535300 BM421130 - Conserved hypothetical protein 6e+0 At4g04810 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.4 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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