CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0133500

Gene name
Homology with Arabidopsis Similar to At4g36780: transcription regulator (HF=4e-3)

Module size 8 genes

NF 0.18

%ile 15.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.78 93.4 0.96 Os10g0133500 AK066866.1 - Transferase family protein 4e-3 At4g36780 transcription regulator O.I. H.G. S.X.
0.50 68.0 0.99 Os05g0113200 AK110680.1 - Hypothetical protein 7e+0 At2g20784 unknown protein O.I. H.G. S.X.
0.40 51.1 0.99 Os06g0340900 9634.m02296 - - 6e-1 At4g11175 translation initiation factor IF-1, chloroplast, putative O.I. H.G. S.X.
0.32 36.3 0.98 Os08g0122266 9636.m00192 - - 1e+0 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) O.I. H.G. S.X.
0.12 7.2 0.98 Os10g0379000 9638.m01982 - - 6e-1 At5g60590 yrdC protein-related O.I. H.G. S.X.
0.12 7.2 0.98 Os02g0778600 AK106971.1 - - 2e-2 At3g43860 AtGH9A4 (Arabidopsis thaliana Glycosyl Hydrolase 9A4) O.I. H.G. S.X.
0.10 5.7 0.97 Os11g0619800 AK107437.1 - BTB/POZ domain containing protein 3e+0 At3g55790 unknown protein O.I. H.G. S.X.
0.08 4.2 0.97 Os01g0698900 9629.m04872 - Nascent polypeptide associated complex alpha chain 8e-4 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.2 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.1 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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