CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0131800

Gene name
Homology with Arabidopsis Similar to At3g53370: DNA-binding S1FA family protein (HF=2e+0)

Module size 18 genes

NF 0.46

%ile 60.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.99 Os10g0131800 NM_194728.1 - Conserved hypothetical protein 2e+0 At3g53370 DNA-binding S1FA family protein O.I. H.G. S.X.
0.62 81.5 0.99 Os01g0679400 AK107970.1 - Hypothetical protein 1e+0 At1g21940 unknown protein O.I. H.G. S.X.
0.60 79.7 0.99 Os01g0910350 9629.m06774 - - 3e+0 At2g27410 unknown protein O.I. H.G. S.X.
0.57 77.0 0.99 Os01g0854200 NM_190657.1 - - 5e-1 At1g68140 - O.I. H.G. S.X.
0.57 77.0 0.99 Os07g0183700 9635.m00812 - - 8e+0 At3g28950 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related O.I. H.G. S.X.
0.57 77.0 0.99 Os04g0318700 9638.m00476 - - 1e+0 At1g02405 proline-rich family protein O.I. H.G. S.X.
0.51 68.7 0.99 Os03g0693500 9631.m04743 - - 1e+1 At3g12470 nucleic acid binding O.I. H.G. S.X.
0.50 68.0 0.99 Os11g0240500 9639.m01257 - - 4e+0 At5g12880 proline-rich family protein O.I. H.G. S.X.
0.49 64.4 0.99 Os04g0226700 9632.m01388 - - 1e+0 At5g13510 ribosomal protein L10 family protein O.I. H.G. S.X.
0.48 63.7 0.99 Os05g0506400 9633.m04001 - Hypothetical protein 4e+0 At5g55750 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.46 60.9 0.99 Os02g0517399 9630.m02999 - - 3e+0 At1g75270 DHAR2 (DEHYDROASCORBATE REDUCTASE 2) O.I. H.G. S.X.
0.45 58.8 0.99 Os11g0434850 9639.m02187 - - 6e+0 At4g04870 CLS (CARDIOLIPIN SYNTHASE) O.I. H.G. S.X.
0.43 55.4 0.99 Os10g0463400 9638.m02834 - - 2e+0 At1g75670 DNA-directed RNA polymerase/ RNA binding O.I. H.G. S.X.
0.41 52.4 0.99 Os01g0880900 AK069671.1 - - 4e+0 At3g52520 unknown protein O.I. H.G. S.X.
0.39 48.3 0.99 Os12g0205600 9638.m00882 - - 3e+0 At5g37770 TCH2 (TOUCH 2) O.I. H.G. S.X.
0.37 45.0 0.99 Os06g0526300 9634.m03139 - - 2e+0 At5g45113 mitochondrial transcription termination factor-related / mTERF-related O.I. H.G. S.X.
0.36 44.0 0.99 Os11g0109600 9639.m00085 - Uncharacterized Cys-rich domain containing protein 2e-3 At3g62890 binding O.I. H.G. S.X.
0.22 19.4 0.99 Os02g0583500 9630.m03564 - Conserved hypothetical protein 7e+0 At5g64360 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.61	81.2	0.99	Os10g0131800	NM_194728.1	-	Conserved hypothetical protein	2e+0	At3g53370	DNA-binding S1FA family protein	O.I.	H.G.	S.X.
0.62	81.5	0.99	Os01g0679400	AK107970.1	-	Hypothetical protein	1e+0	At1g21940	unknown protein	O.I.	H.G.	S.X.
0.60	79.7	0.99	Os01g0910350	9629.m06774	-	-	3e+0	At2g27410	unknown protein	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os01g0854200	NM_190657.1	-	-	5e-1	At1g68140	-	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os07g0183700	9635.m00812	-	-	8e+0	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os04g0318700	9638.m00476	-	-	1e+0	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.
0.51	68.7	0.99	Os03g0693500	9631.m04743	-	-	1e+1	At3g12470	nucleic acid binding	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os11g0240500	9639.m01257	-	-	4e+0	At5g12880	proline-rich family protein	O.I.	H.G.	S.X.
0.49	64.4	0.99	Os04g0226700	9632.m01388	-	-	1e+0	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.
0.48	63.7	0.99	Os05g0506400	9633.m04001	-	Hypothetical protein	4e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.46	60.9	0.99	Os02g0517399	9630.m02999	-	-	3e+0	At1g75270	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	O.I.	H.G.	S.X.
0.45	58.8	0.99	Os11g0434850	9639.m02187	-	-	6e+0	At4g04870	CLS (CARDIOLIPIN SYNTHASE)	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os10g0463400	9638.m02834	-	-	2e+0	At1g75670	DNA-directed RNA polymerase/ RNA binding	O.I.	H.G.	S.X.
0.41	52.4	0.99	Os01g0880900	AK069671.1	-	-	4e+0	At3g52520	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.99	Os12g0205600	9638.m00882	-	-	3e+0	At5g37770	TCH2 (TOUCH 2)	O.I.	H.G.	S.X.
0.37	45.0	0.99	Os06g0526300	9634.m03139	-	-	2e+0	At5g45113	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os11g0109600	9639.m00085	-	Uncharacterized Cys-rich domain containing protein	2e-3	At3g62890	binding	O.I.	H.G.	S.X.
0.22	19.4	0.99	Os02g0583500	9630.m03564	-	Conserved hypothetical protein	7e+0	At5g64360	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.1 99.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
12.3 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.5 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
42.0	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
21.1	99.2	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
12.3	98.3	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.5	98.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9	97.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.028 1 GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.028	1	GO:0000160	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os10g0131800
Gene name
Homology with Arabidopsis	Similar to At3g53370: DNA-binding S1FA family protein (HF=2e+0)
Module size	18 genes
NF	0.46
%ile	60.0

Co-expression analysis

Gene ID Os10g0131800 Gene name Homology with ArabidopsisSimilar to At3g53370: DNA-binding S1FA family protein (HF=2e+0) Module size 18 genes NF 0.46 %ile 60.0

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0131800

Gene name
Homology with Arabidopsis Similar to At3g53370: DNA-binding S1FA family protein (HF=2e+0)

Module size 18 genes

NF 0.46

%ile 60.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays