CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0124600

Gene name
Homology with Arabidopsis Similar to At1g43900: protein phosphatase 2C, putative / PP2C, putative (HF=4e-1)

Module size 6 genes

NF 0.73

%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os10g0124600 9638.m00268 - - 4e-1 At1g43900 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.83 95.8 0.98 Os11g0649100 9639.m03961 - - 2e+0 At4g12760 unknown protein O.I. H.G. S.X.
0.71 89.6 0.99 Os08g0141200 9636.m00386 - - 9e-1 At5g38300 unknown protein O.I. H.G. S.X.
0.67 87.2 0.99 Os10g0334800 9638.m01577 - - 3e+1 At5g35230 unknown protein O.I. H.G. S.X.
0.59 78.0 0.98 Os07g0567500 NM_186364.1 - Conserved hypothetical protein 2e+0 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.50 68.0 0.98 Os09g0349800 9637.m01547 - Protein kinase domain containing protein 1e+0 At5g66710 protein kinase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.1 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.1 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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