CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0114400

Gene name
Homology with Arabidopsis Similar to At2g01950: BRL2 (BRI1-LIKE 2) (HF=5e-10)

Module size 6 genes

NF 0.39

%ile 47.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.92 Os10g0114400 9638.m00154 - Protein kinase domain containing protein 5e-10 At2g01950 BRL2 (BRI1-LIKE 2) O.I. H.G. S.X.
0.56 76.3 0.93 Os04g0491500 AK101116.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 2e-2 At4g21680 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.50 68.0 0.93 Os03g0817500 AK111450.1 - Protein of unknown function DUF231 domaincontaining protein 1e-5 At1g78710 unknown protein O.I. H.G. S.X.
0.50 68.0 0.93 Os01g0551800 NM_193415.1 - Conserved hypothetical protein 2e-3 At5g24310 ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) O.I. H.G. S.X.
0.46 60.9 0.93 Os02g0715000 AK060534.1 - Cysteine proteinase GP-II (EC 3.4.22.-) 4e-5 At1g20850 XCP2 (xylem cysteine peptidase 2) O.I. H.G. S.X.
0.11 6.5 0.92 Os09g0466800 AK101607.1 - Conserved hypothetical protein 3e+0 At3g06200 guanylate kinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.8 99.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.3 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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