CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0108700

Gene name
Homology with Arabidopsis Similar to At5g50460: protein transport protein SEC61 gamma subunit, putative (HF=1e+1)

Module size 12 genes

NF 0.29

%ile 30.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.77 Os10g0108700 AK060060.1 - Transferase family protein 1e+1 At5g50460 protein transport protein SEC61 gamma subunit, putative O.I. H.G. S.X.
0.43 55.4 0.89 Os09g0125900 AK065634.1 - ATP-binding cassette, sub-family G, member 1(White protein homolog) (ATP-binding cassette transporter8). Splice isoform 3 6e-2 At1g51500 CER5 (ECERIFERUM 5) O.I. H.G. S.X.
0.38 46.9 0.80 Os03g0382100 9631.m02606 - Naringenin-chalcone synthase family protein 7e-1 At2g28630 KCS12 (3-KETOACYL-COA SYNTHASE 12) O.I. H.G. S.X.
0.30 32.7 0.88 Os04g0401100 AK061279.1 - Conserved hypothetical protein 2e+0 At5g62950 catalytic/ nucleotide binding O.I. H.G. S.X.
0.29 31.1 0.85 Os01g0842400 AK068901.1 - Laccase (EC 1.10.3.2) 7e-5 At2g38080 IRX12 (IRREGULAR XYLEM 12) O.I. H.G. S.X.
0.27 27.5 0.90 Os09g0445500 AK120514.1 - Zn-finger, C2H2 type domain containing protein 7e-1 At2g44080 ARL (ARGOS-LIKE) O.I. H.G. S.X.
0.26 25.6 0.84 Os09g0373200 AK109686.1 - Strictosidine synthase family protein 2e-1 At5g20540 ATBRXL4 (BREVIS RADIX-LIKE 4) O.I. H.G. S.X.
0.25 24.1 0.81 Os04g0353600 CB641510 - Male sterility protein family protein 2e+0 At1g35333 unknown protein O.I. H.G. S.X.
0.25 24.1 0.85 Os11g0641800 AK066963.1 - Multicopper oxidase, type 1 domain containingprotein 3e-1 At2g38080 IRX12 (IRREGULAR XYLEM 12) O.I. H.G. S.X.
0.23 21.2 0.82 Os06g0314600 AK067321.1 - Floral nectary-specific protein 2e-1 At1g15125 S-adenosylmethionine-dependent methyltransferase/ methyltransferase O.I. H.G. S.X.
0.22 19.4 0.83 Os02g0614600 AK099971.1 - - 2e+0 At2g38600 acid phosphatase class B family protein O.I. H.G. S.X.
0.21 17.9 0.84 Os11g0142400 AK067423.1 - Strictosidine synthase family protein 1e-2 At2g41290 strictosidine synthase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.2 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6 99.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.6 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.6 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.028 2 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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