Co-expression analysis

Gene ID Os10g0108700
Gene name
Homology with ArabidopsisSimilar to At5g50460: protein transport protein SEC61 gamma subunit, putative (HF=1e+1)
Module size 12 genes
NF 0.29
%ile 30.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5777.00.77Os10g0108700AK060060.1-Transferase family protein1e+1At5g50460protein transport protein SEC61 gamma subunit, putativeO.I.H.G.S.X.
0.4355.40.89Os09g0125900AK065634.1-ATP-binding cassette, sub-family G, member 1(White protein homolog) (ATP-binding cassette transporter8). Splice isoform 36e-2At1g51500CER5 (ECERIFERUM 5)O.I.H.G.S.X.
0.3846.90.80Os03g03821009631.m02606-Naringenin-chalcone synthase family protein7e-1At2g28630KCS12 (3-KETOACYL-COA SYNTHASE 12)O.I.H.G.S.X.
0.3032.70.88Os04g0401100AK061279.1-Conserved hypothetical protein2e+0At5g62950catalytic/ nucleotide bindingO.I.H.G.S.X.
0.2931.10.85Os01g0842400AK068901.1-Laccase (EC 1.10.3.2)7e-5At2g38080IRX12 (IRREGULAR XYLEM 12)O.I.H.G.S.X.
0.2727.50.90Os09g0445500AK120514.1-Zn-finger, C2H2 type domain containing protein7e-1At2g44080ARL (ARGOS-LIKE)O.I.H.G.S.X.
0.2625.60.84Os09g0373200AK109686.1-Strictosidine synthase family protein2e-1At5g20540ATBRXL4 (BREVIS RADIX-LIKE 4)O.I.H.G.S.X.
0.2524.10.81Os04g0353600CB641510-Male sterility protein family protein2e+0At1g35333unknown proteinO.I.H.G.S.X.
0.2524.10.85Os11g0641800AK066963.1-Multicopper oxidase, type 1 domain containingprotein3e-1At2g38080IRX12 (IRREGULAR XYLEM 12)O.I.H.G.S.X.
0.2321.20.82Os06g0314600AK067321.1-Floral nectary-specific protein2e-1At1g15125S-adenosylmethionine-dependent methyltransferase/ methyltransferaseO.I.H.G.S.X.
0.2219.40.83Os02g0614600AK099971.1--2e+0At2g38600acid phosphatase class B family proteinO.I.H.G.S.X.
0.2117.90.84Os11g0142400AK067423.1-Strictosidine synthase family protein1e-2At2g41290strictosidine synthase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.299.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
20.299.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.099.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.699.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.798.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.698.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.698.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.598.9GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.598.9GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.898.8GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0282GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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