CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0106750

Gene name
Homology with Arabidopsis Similar to At5g24105: AGP41 (ARABINOGALACTAN-PROTEIN 41) (HF=1e+1)

Module size 11 genes

NF 0.45

%ile 58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.98 Os10g0106750 NM_194527.1 - - 1e+1 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) O.I. H.G. S.X.
0.64 83.4 0.98 Os11g0308900 9639.m01910 - - 1e+1 At5g60670 60S ribosomal protein L12 (RPL12C) O.I. H.G. S.X.
0.46 60.9 0.99 Os07g0141801 9635.m00420 - - 6e+0 At5g40500 unknown protein O.I. H.G. S.X.
0.44 58.1 0.98 Os09g0113200 9637.m00099 - - 3e+0 At3g20390 endoribonuclease L-PSP family protein O.I. H.G. S.X.
0.44 58.1 0.98 Os02g0304600 9630.m01926 - - 7e-2 At5g53960 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) O.I. H.G. S.X.
0.44 58.1 0.98 Os06g0620200 9634.m04004 - Curculin-like (mannose-binding) lectin domaincontaining protein 5e-3 At4g04510 protein kinase family protein O.I. H.G. S.X.
0.40 51.1 0.98 Os07g0204000 9635.m01008 - - 1e-16 At5g19790 RAP2.11 (related to AP2 11) O.I. H.G. S.X.
0.40 51.1 0.99 Os02g0497100 9630.m02809 - - 4e-1 At3g26800 unknown protein O.I. H.G. S.X.
0.39 48.3 0.98 Os03g0836250 9631.m06122 - - 2e-1 At5g48657 defense protein-related O.I. H.G. S.X.
0.35 41.7 0.99 Os02g0688900 9630.m04503 - GPI transamidase subunit PIG-U family protein 4e-9 At1g12730 cell division cycle protein-related O.I. H.G. S.X.
0.31 34.5 0.99 Os05g0239100 AK105514.1 - - 9e-1 At5g53880 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.4 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.6 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.9 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.9 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0006506 The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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