CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0106300

Gene name
Homology with Arabidopsis Similar to At4g24050: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e+1)

Module size 6 genes

NF 0.52

%ile 68.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.98 Os10g0106300 9638.m00073 - - 1e+1 At4g24050 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.73 91.1 0.98 Os01g0604600 AU058134 - Conserved hypothetical protein 3e+0 At3g48675 unknown protein O.I. H.G. S.X.
0.53 71.3 0.98 Os09g0116000 9637.m00121 - - 4e+0 At5g64040 PSAN O.I. H.G. S.X.
0.44 58.1 0.98 Os07g0688400 9638.m02651 - - 2e+0 At4g19270 unknown protein O.I. H.G. S.X.
0.43 55.4 0.98 Os01g0919100 9633.m03133 - - 2e-1 At3g48880 F-box family protein O.I. H.G. S.X.
0.30 32.7 0.98 Os02g0527700 AK069409.1 - Conserved hypothetical protein 6e-1 At2g23340 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.6 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.2263.1.A1_at, orthologous to the query gene, Os10g0106300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 Zm.2263.1.A1_at At4g24050 - - 7e-5 At2g43050 ATPMEPCRD O.I. H.G. S.X.
0.67 85.8 Zm.13797.2.A1_at At4g24050 hypothetical protein LOC100279789 - 8e-4 At3g20770 EIN3 (ETHYLENE-INSENSITIVE3) O.I. H.G. S.X.
0.61 79.5 Zm.1404.1.A1_at At4g24050 sugar transport protein 5 - 7e+0 At2g37585 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.50 65.7 Zm.12848.1.A1_at At4g24050 hypothetical protein LOC100273763 - 5e-1 At1g18780 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.44 55.7 Zm.2925.3.A1_at At4g24050 Ubiquitin - 4e-41 At2g47110 UBQ6 O.I. H.G. S.X.
0.19 12.8 Zm.17843.2.A1_at At4g24050 hypothetical protein LOC100216964 - 6e-1 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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