CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0106300

Gene name
Homology with Arabidopsis Similar to At4g24050: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e+1)

Module size 6 genes

NF 0.52

%ile 68.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.98 Os10g0106300 9638.m00073 - - 1e+1 At4g24050 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.73 91.1 0.98 Os01g0604600 AU058134 - Conserved hypothetical protein 3e+0 At3g48675 unknown protein O.I. H.G. S.X.
0.53 71.3 0.98 Os09g0116000 9637.m00121 - - 4e+0 At5g64040 PSAN O.I. H.G. S.X.
0.44 58.1 0.98 Os07g0688400 9638.m02651 - - 2e+0 At4g19270 unknown protein O.I. H.G. S.X.
0.43 55.4 0.98 Os01g0919100 9633.m03133 - - 2e-1 At3g48880 F-box family protein O.I. H.G. S.X.
0.30 32.7 0.98 Os02g0527700 AK069409.1 - Conserved hypothetical protein 6e-1 At2g23340 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.6 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig15506_at, orthologous to the query gene, Os10g0106300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.58 74.9 Contig15506_at At4g24050 - - 6e+0 At3g28420 unknown protein O.I. H.G. S.X.
0.45 59.3 Contig11891_at At4g24050 - - 1e-7 At1g33230 - O.I. H.G. S.X.
0.38 49.5 HU05P03u_s_at At4g24050 - - 3e+0 At5g03930 unknown protein O.I. H.G. S.X.
0.32 40.3 Contig13590_at At4g24050 - - 2e-2 At2g31070 TCP10 (TCP DOMAIN PROTEIN 10) O.I. H.G. S.X.
0.29 35.5 Contig840_s_at At4g24050 vacuolar proton-inorganic pyrophosphatase - 3e-26 At1g15690 AVP1 O.I. H.G. S.X.
0.25 28.9 Contig11815_at At4g24050 - - 2e-3 At5g19370 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein O.I. H.G. S.X.
0.20 21.1 Contig12602_at At4g24050 - - 4e-6 At5g52820 WD-40 repeat family protein / notchless protein, putative O.I. H.G. S.X.
0.15 14.1 Contig6483_at At4g24050 - - 3e-1 At2g23920 unknown protein O.I. H.G. S.X.
0.14 12.9 Contig9897_at At4g24050 - - 6e+0 At4g14690 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) O.I. H.G. S.X.
0.13 11.6 HF21J01r_at At4g24050 - - 3e-1 At2g45060 - O.I. H.G. S.X.
0.11 9.4 Contig24681_at At4g24050 - - 1e+0 At3g15020 malate dehydrogenase (NAD), mitochondrial, putative O.I. H.G. S.X.
0.08 6.5 Contig16530_at At4g24050 - - 1e+0 At4g26470 calcium ion binding O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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