CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0106300

Gene name
Homology with Arabidopsis Similar to At4g24050: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e+1)

Module size 6 genes

NF 0.52

%ile 68.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.98 Os10g0106300 9638.m00073 - - 1e+1 At4g24050 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.73 91.1 0.98 Os01g0604600 AU058134 - Conserved hypothetical protein 3e+0 At3g48675 unknown protein O.I. H.G. S.X.
0.53 71.3 0.98 Os09g0116000 9637.m00121 - - 4e+0 At5g64040 PSAN O.I. H.G. S.X.
0.44 58.1 0.98 Os07g0688400 9638.m02651 - - 2e+0 At4g19270 unknown protein O.I. H.G. S.X.
0.43 55.4 0.98 Os01g0919100 9633.m03133 - - 2e-1 At3g48880 F-box family protein O.I. H.G. S.X.
0.30 32.7 0.98 Os02g0527700 AK069409.1 - Conserved hypothetical protein 6e-1 At2g23340 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	93.1	0.98	Os10g0106300	9638.m00073	-	-	1e+1	At4g24050	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.73	91.1	0.98	Os01g0604600	AU058134	-	Conserved hypothetical protein	3e+0	At3g48675	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os09g0116000	9637.m00121	-	-	4e+0	At5g64040	PSAN	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os07g0688400	9638.m02651	-	-	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.
0.43	55.4	0.98	Os01g0919100	9633.m03133	-	-	2e-1	At3g48880	F-box family protein	O.I.	H.G.	S.X.
0.30	32.7	0.98	Os02g0527700	AK069409.1	-	Conserved hypothetical protein	6e-1	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.6 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
29.6	99.7	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.6	98.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5	98.2	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g24050, orthologous to the query gene, Os10g0106300

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At4g24050 828505 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. H.G. S.X.
0.35 41.6 At1g54170 841857 CID3 (CTC-Interacting Domain 3) ataxin-2-related, similar to SCA2 (GI:1770390) (Homo sapiens); similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins. O.I. H.G. S.X.
0.34 39.8 At5g06780 830567 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.32 35.7 At1g07470 837259 transcription factor IIA large subunit, putative / TFIIA large subunit, putative F:RNA polymerase II transcription factor activity, transcription factor activity;P:transcription initiation from RNA polymerase II promoter, transcription;C:transcription factor TFIIA complex;MFPOBV O.I. H.G. S.X.
0.31 33.8 At2g17350 816242 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFB O.I. H.G. S.X.
0.31 33.8 At3g62140 825387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB O.I. H.G. S.X.
0.29 30.3 At4g37180 829872 myb family transcription factor myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen O.I. H.G. S.X.
0.29 30.3 At2g13370 815823 CHR5 (chromatin remodeling 5) F:chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;OMBFPVA O.I. H.G. S.X.
0.29 30.3 At4g30630 829186 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.29 30.3 At5g54730 835562 AtATG18f F:molecular_function unknown;P:response to starvation;C:chloroplast;MFPOB O.I. H.G. S.X.
0.29 30.3 At5g58000 835911 - F:unknown;P:unknown;C:endoplasmic reticulum, chloroplast;MOPFVB O.I. H.G. S.X.
0.28 30.3 At3g52220 824387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. H.G. S.X.
0.27 26.2 At3g02860 821212 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFBPVA O.I. H.G. S.X.
0.26 24.4 At5g27650 832827 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.26 24.4 At3g06570 819836 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBO O.I. H.G. S.X.
0.25 22.6 At5g12230 831097 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.25 22.6 At5g64160 836537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. H.G. S.X.
0.25 22.6 At3g20560 821603 ATPDIL5-3 (PDI-LIKE 5-3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). O.I. H.G. S.X.
0.24 20.7 At2g17030 816206 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.23 19.3 At4g28610 828979 PHR1 (PHOSPHATE STARVATION RESPONSE 1) Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. Acts upstream of PHO2 in phosphate signaling. O.I. H.G. S.X.
0.22 17.5 At4g32350 829369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. H.G. S.X.
0.22 17.5 At5g23090 832373 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) F:transcription factor activity;P:regulation of transcription;C:nucleus;MPFO O.I. H.G. S.X.
0.22 17.5 At5g18230 831941 transcription regulator NOT2/NOT3/NOT5 family protein F:transcription regulator activity;P:negative regulation of transcription, regulation of transcription;C:nucleus;MOFBPVA O.I. H.G. S.X.
0.22 17.5 At2g35680 818137 dual specificity protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:cellular_component unknown;MOBPFAV O.I. H.G. S.X.
0.21 15.8 At4g24680 828570 - F:molecular_function unknown;P:unknown;C:unknown;OMFBPVA O.I. H.G. S.X.
0.21 15.8 At3g27530 822375 GC6 (golgin candidate 6) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein. O.I. H.G. S.X.
0.21 15.8 At1g65590 842871 HEXO3 (BETA-HEXOSAMINIDASE 3) Encodes a protein with beta-hexosaminidase activity. Located on the plasma membrane. O.I. H.G. S.X.
0.21 15.8 At1g77220 844058 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;MPFO O.I. H.G. S.X.
0.21 15.8 At2g10950 815559 BSD domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. H.G. S.X.
0.21 15.8 At5g46020 834642 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA O.I. H.G. S.X.
0.20 14.4 At2g42620 818862 MAX2 (MORE AXILLARY BRANCHES 2) The mutations at MAX2 cause increased hypocotyl and petiole elongation in light-grown seedlings. Positional cloning identifies MAX2 as a member of the F-box leucine-rich repeat family of proteins. MAX2 is identical to ORE9, a proposed regulator of leaf senescence. Involved in positive regulation of light responses. O.I. H.G. S.X.
0.20 14.4 At3g62240 825397 zinc finger (C2H2 type) family protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPV O.I. H.G. S.X.
0.20 14.4 At5g22950 832359 VPS24.1 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBA O.I. H.G. S.X.
0.18 11.4 At2g35330 818100 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAV O.I. H.G. S.X.
0.18 11.4 At5g37370 833711 ATSRL1 encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt. O.I. H.G. S.X.
0.17 10.2 At3g47610 823915 transcription regulator/ zinc ion binding F:transcription regulator activity, zinc ion binding;P:regulation of transcription;C:nucleus;MFOP O.I. H.G. S.X.
0.16 8.8 At1g23260 838935 MMZ1 (MMS ZWEI HOMOLOGUE 1) MMZ1/UEV1A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ1/UEV1A and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ1/UEV1A transcripts are found at low levels in most plant organs, but cannot be detected in the pollen. Transcript levels do not appear to be stress-inducible. The uev1a-1 mutant shows normal sensitivity to MMS in germination assays suggesting that UEV1A is not required for DNA damage tolerance during this developmental stage. O.I. H.G. S.X.
0.15 7.8 At3g19990 821537 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PBO O.I. H.G. S.X.
0.15 7.8 At5g40250 834023 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. H.G. S.X.
0.14 6.8 At5g09410 830800 EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN) calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum) O.I. H.G. S.X.
0.14 6.8 At5g19430 832063 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOVF O.I. H.G. S.X.
0.13 5.8 At2g42680 818868 MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated. O.I. H.G. S.X.
0.13 5.8 At1g30300 839910 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPAF O.I. H.G. S.X.
0.12 4.9 At5g63260 836446 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMFO O.I. H.G. S.X.
0.11 4.1 At2g04550 814997 IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5) Encodes a protein phosphatase that interacts with MPK12, but not with other MAP kinases. It can dephosphorylate a dually phosphorylated MPK12 in vitro and can inactivate MPK12 in vivo. ibr5 mutants have reduced sensitivity to auxin and abscisic acid. O.I. H.G. S.X.
0.10 3.4 At5g62090 836329 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. H.G. S.X.
0.10 3.4 At3g11760 820349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.10 3.4 At5g42560 834262 abscisic acid-responsive HVA22 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. H.G. S.X.
0.09 2.8 At1g80900 844430 magnesium transporter CorA-like family protein (MGT1) (MRS2) F:metal ion transmembrane transporter activity;P:metal ion transport;C:membrane;PFOMB O.I. H.G. S.X.
0.09 2.8 At1g68160 843144 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;POF O.I. H.G. S.X.
0.08 2.3 At2g47350 819348 PAPA-1-like family protein / zinc finger (HIT type) family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.08 2.3 At1g06070 837116 bZIP transcription factor, putative (bZIP69) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;OMFPBVA O.I. H.G. S.X.
0.07 1.9 At5g03415 831847 DPB Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost. O.I. H.G. S.X.
0.07 1.9 At4g11860 826793 - F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MFOPB O.I. H.G. S.X.
0.07 1.9 At5g19910 832113 SOH1 family protein F:RNA polymerase II transcription mediator activity;P:regulation of transcription;C:mediator complex;MFOP O.I. H.G. S.X.
0.07 1.9 At5g66160 836748 JR700 Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. O.I. H.G. S.X.
0.07 1.9 At3g16830 820936 TPR2 (TOPLESS-RELATED 2) F:unknown;P:primary shoot apical meristem specification;C:endomembrane system;MBFOPA O.I. H.G. S.X.
0.05 1.1 At4g14920 827150 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. H.G. S.X.
0.05 1.1 At5g02310 830916 PRT6 (PROTEOLYSIS 6) Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. O.I. H.G. S.X.
0.05 1.1 At2g42700 818870 - F:molecular_function unknown;P:vesicle-mediated transport, vesicle docking during exocytosis;C:cellular_component unknown;MPO O.I. H.G. S.X.
0.05 1.1 At3g08890 820038 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.04 0.9 At3g49590 824121 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. H.G. S.X.
0.04 0.9 At3g53520 824520 UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1) Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. O.I. H.G. S.X.
0.04 0.9 At3g01590 821108 aldose 1-epimerase family protein F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOPFM O.I. H.G. S.X.
0.04 0.9 At2g35230 818090 VQ motif-containing protein F:unknown;P:unknown;C:unknown;MFPOBVA O.I. H.G. S.X.
0.03 0.6 At3g03880 821095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At4g24050	828505	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	H.G.	S.X.
0.35	41.6	At1g54170	841857	CID3 (CTC-Interacting Domain 3)	ataxin-2-related, similar to SCA2 (GI:1770390) (Homo sapiens); similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins.	O.I.	H.G.	S.X.
0.34	39.8	At5g06780	830567	emsy N terminus domain-containing protein / ENT domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.32	35.7	At1g07470	837259	transcription factor IIA large subunit, putative / TFIIA large subunit, putative	F:RNA polymerase II transcription factor activity, transcription factor activity;P:transcription initiation from RNA polymerase II promoter, transcription;C:transcription factor TFIIA complex;MFPOBV	O.I.	H.G.	S.X.
0.31	33.8	At2g17350	816242	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFB	O.I.	H.G.	S.X.
0.31	33.8	At3g62140	825387	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB	O.I.	H.G.	S.X.
0.29	30.3	At4g37180	829872	myb family transcription factor	myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen	O.I.	H.G.	S.X.
0.29	30.3	At2g13370	815823	CHR5 (chromatin remodeling 5)	F:chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;OMBFPVA	O.I.	H.G.	S.X.
0.29	30.3	At4g30630	829186	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.29	30.3	At5g54730	835562	AtATG18f	F:molecular_function unknown;P:response to starvation;C:chloroplast;MFPOB	O.I.	H.G.	S.X.
0.29	30.3	At5g58000	835911	-	F:unknown;P:unknown;C:endoplasmic reticulum, chloroplast;MOPFVB	O.I.	H.G.	S.X.
0.28	30.3	At3g52220	824387	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	H.G.	S.X.
0.27	26.2	At3g02860	821212	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFBPVA	O.I.	H.G.	S.X.
0.26	24.4	At5g27650	832827	PWWP domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	H.G.	S.X.
0.26	24.4	At3g06570	819836	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBO	O.I.	H.G.	S.X.
0.25	22.6	At5g12230	831097	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	H.G.	S.X.
0.25	22.6	At5g64160	836537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	H.G.	S.X.
0.25	22.6	At3g20560	821603	ATPDIL5-3 (PDI-LIKE 5-3)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).	O.I.	H.G.	S.X.
0.24	20.7	At2g17030	816206	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.23	19.3	At4g28610	828979	PHR1 (PHOSPHATE STARVATION RESPONSE 1)	Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. Acts upstream of PHO2 in phosphate signaling.	O.I.	H.G.	S.X.
0.22	17.5	At4g32350	829369	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	H.G.	S.X.
0.22	17.5	At5g23090	832373	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	F:transcription factor activity;P:regulation of transcription;C:nucleus;MPFO	O.I.	H.G.	S.X.
0.22	17.5	At5g18230	831941	transcription regulator NOT2/NOT3/NOT5 family protein	F:transcription regulator activity;P:negative regulation of transcription, regulation of transcription;C:nucleus;MOFBPVA	O.I.	H.G.	S.X.
0.22	17.5	At2g35680	818137	dual specificity protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:cellular_component unknown;MOBPFAV	O.I.	H.G.	S.X.
0.21	15.8	At4g24680	828570	-	F:molecular_function unknown;P:unknown;C:unknown;OMFBPVA	O.I.	H.G.	S.X.
0.21	15.8	At3g27530	822375	GC6 (golgin candidate 6)	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein.	O.I.	H.G.	S.X.
0.21	15.8	At1g65590	842871	HEXO3 (BETA-HEXOSAMINIDASE 3)	Encodes a protein with beta-hexosaminidase activity. Located on the plasma membrane.	O.I.	H.G.	S.X.
0.21	15.8	At1g77220	844058	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;MPFO	O.I.	H.G.	S.X.
0.21	15.8	At2g10950	815559	BSD domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	H.G.	S.X.
0.21	15.8	At5g46020	834642	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	O.I.	H.G.	S.X.
0.20	14.4	At2g42620	818862	MAX2 (MORE AXILLARY BRANCHES 2)	The mutations at MAX2 cause increased hypocotyl and petiole elongation in light-grown seedlings. Positional cloning identifies MAX2 as a member of the F-box leucine-rich repeat family of proteins. MAX2 is identical to ORE9, a proposed regulator of leaf senescence. Involved in positive regulation of light responses.	O.I.	H.G.	S.X.
0.20	14.4	At3g62240	825397	zinc finger (C2H2 type) family protein	F:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPV	O.I.	H.G.	S.X.
0.20	14.4	At5g22950	832359	VPS24.1	F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBA	O.I.	H.G.	S.X.
0.18	11.4	At2g35330	818100	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAV	O.I.	H.G.	S.X.
0.18	11.4	At5g37370	833711	ATSRL1	encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.	O.I.	H.G.	S.X.
0.17	10.2	At3g47610	823915	transcription regulator/ zinc ion binding	F:transcription regulator activity, zinc ion binding;P:regulation of transcription;C:nucleus;MFOP	O.I.	H.G.	S.X.
0.16	8.8	At1g23260	838935	MMZ1 (MMS ZWEI HOMOLOGUE 1)	MMZ1/UEV1A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ1/UEV1A and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ1/UEV1A transcripts are found at low levels in most plant organs, but cannot be detected in the pollen. Transcript levels do not appear to be stress-inducible. The uev1a-1 mutant shows normal sensitivity to MMS in germination assays suggesting that UEV1A is not required for DNA damage tolerance during this developmental stage.	O.I.	H.G.	S.X.
0.15	7.8	At3g19990	821537	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PBO	O.I.	H.G.	S.X.
0.15	7.8	At5g40250	834023	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	H.G.	S.X.
0.14	6.8	At5g09410	830800	EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN)	calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum)	O.I.	H.G.	S.X.
0.14	6.8	At5g19430	832063	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOVF	O.I.	H.G.	S.X.
0.13	5.8	At2g42680	818868	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.	O.I.	H.G.	S.X.
0.13	5.8	At1g30300	839910	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPAF	O.I.	H.G.	S.X.
0.12	4.9	At5g63260	836446	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMFO	O.I.	H.G.	S.X.
0.11	4.1	At2g04550	814997	IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)	Encodes a protein phosphatase that interacts with MPK12, but not with other MAP kinases. It can dephosphorylate a dually phosphorylated MPK12 in vitro and can inactivate MPK12 in vivo. ibr5 mutants have reduced sensitivity to auxin and abscisic acid.	O.I.	H.G.	S.X.
0.10	3.4	At5g62090	836329	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	H.G.	S.X.
0.10	3.4	At3g11760	820349	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.10	3.4	At5g42560	834262	abscisic acid-responsive HVA22 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	H.G.	S.X.
0.09	2.8	At1g80900	844430	magnesium transporter CorA-like family protein (MGT1) (MRS2)	F:metal ion transmembrane transporter activity;P:metal ion transport;C:membrane;PFOMB	O.I.	H.G.	S.X.
0.09	2.8	At1g68160	843144	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	H.G.	S.X.
0.08	2.3	At2g47350	819348	PAPA-1-like family protein / zinc finger (HIT type) family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	H.G.	S.X.
0.08	2.3	At1g06070	837116	bZIP transcription factor, putative (bZIP69)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;OMFPBVA	O.I.	H.G.	S.X.
0.07	1.9	At5g03415	831847	DPB	Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost.	O.I.	H.G.	S.X.
0.07	1.9	At4g11860	826793	-	F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MFOPB	O.I.	H.G.	S.X.
0.07	1.9	At5g19910	832113	SOH1 family protein	F:RNA polymerase II transcription mediator activity;P:regulation of transcription;C:mediator complex;MFOP	O.I.	H.G.	S.X.
0.07	1.9	At5g66160	836748	JR700	Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.	O.I.	H.G.	S.X.
0.07	1.9	At3g16830	820936	TPR2 (TOPLESS-RELATED 2)	F:unknown;P:primary shoot apical meristem specification;C:endomembrane system;MBFOPA	O.I.	H.G.	S.X.
0.05	1.1	At4g14920	827150	DNA binding / protein binding / zinc ion binding	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	H.G.	S.X.
0.05	1.1	At5g02310	830916	PRT6 (PROTEOLYSIS 6)	Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.	O.I.	H.G.	S.X.
0.05	1.1	At2g42700	818870	-	F:molecular_function unknown;P:vesicle-mediated transport, vesicle docking during exocytosis;C:cellular_component unknown;MPO	O.I.	H.G.	S.X.
0.05	1.1	At3g08890	820038	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.04	0.9	At3g49590	824121	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	H.G.	S.X.
0.04	0.9	At3g53520	824520	UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1)	Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.	O.I.	H.G.	S.X.
0.04	0.9	At3g01590	821108	aldose 1-epimerase family protein	F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOPFM	O.I.	H.G.	S.X.
0.04	0.9	At2g35230	818090	VQ motif-containing protein	F:unknown;P:unknown;C:unknown;MFPOBVA	O.I.	H.G.	S.X.
0.03	0.6	At3g03880	821095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.

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Gene ID	Os10g0106300
Gene name
Homology with Arabidopsis	Similar to At4g24050: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e+1)
Module size	6 genes
NF	0.52
%ile	68.9

Co-expression analysis

Gene ID Os10g0106300 Gene name Homology with ArabidopsisSimilar to At4g24050: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e+1) Module size 6 genes NF 0.52 %ile 68.9

Co-expressed genes

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Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0106300

Gene name
Homology with Arabidopsis Similar to At4g24050: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e+1)

Module size 6 genes

NF 0.52

%ile 68.9

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays