CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0100300

Gene name
Homology with Arabidopsis Similar to At3g18800: unknown protein (HF=2e-1)

Module size 7 genes

NF 0.46

%ile 59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.94 Os10g0100300 AK065110.1 - Conserved hypothetical protein 2e-1 At3g18800 unknown protein O.I. H.G. S.X.
0.60 79.7 0.97 Os06g0196300 AK059845.1 - Peroxiredoxin Q 9e-12 At3g26060 ATPRX Q O.I. H.G. S.X.
0.50 68.0 0.96 Os03g0595300 AK065923.1 - Conserved hypothetical protein 1e-10 At2g05310 unknown protein O.I. H.G. S.X.
0.48 63.7 0.96 Os02g0834700 AK061331.1 - Conserved hypothetical protein YfcH family protein 1e-8 At2g21280 SULA O.I. H.G. S.X.
0.44 58.1 0.96 Os03g0244000 AK061036.1 - Conserved hypothetical protein 2e-6 At1g75690 chaperone protein dnaJ-related O.I. H.G. S.X.
0.38 46.9 0.96 Os07g0212200 AK071575.1 - MRNA-binding protein (Fragment) 6e-20 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) O.I. H.G. S.X.
0.35 41.7 0.95 Os07g0469100 AK120365.1 - Thylakoid membrane phosphoprotein 14 kDa,chloroplast precursor 7e+0 At5g25240 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
67.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
37.0 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.2 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.077 1 GO:0009225 The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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