CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0572600

Gene name
Homology with Arabidopsis Similar to At1g26970: protein kinase, putative (HF=8e-1)

Module size 6 genes

NF 0.71

%ile 93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.98 Os09g0572600 AK070226.1 - Receptor protein kinase-like protein 8e-1 At1g26970 protein kinase, putative O.I. H.G. S.X.
0.91 98.9 0.98 Os10g0369900 AK069323.1 - Myo-inositol-1-phosphate synthase 5e-49 At5g10170 MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3) O.I. H.G. S.X.
0.83 95.8 0.98 Os05g0588500 AK069614.1 - MtN3 and saliva related transmembrane proteinfamily protein 2e-1 At5g62850 AtVEX1 (VEGETATIVE CELL EXPRESSED1) O.I. H.G. S.X.
0.55 73.7 0.98 Os05g0485800 AK108702.1 - Pollen-specific protein NTP303 precursor 6e-1 At3g13390 sks11 (SKU5 Similar 11) O.I. H.G. S.X.
0.53 71.3 0.99 Os07g0274400 AK100692.1 - B12D family protein 5e+0 At3g48140 senescence-associated protein, putative O.I. H.G. S.X.
0.40 51.1 0.99 Os04g0282200 AK105498.1 - Conserved hypothetical protein 8e-1 At4g33985 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.7 99.5 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
8.1 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.9 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.286 1 GO:0006021 The chemical reactions and pathways resulting in the formation of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms.
0.143 1 GO:0008654 The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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