CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0569400

Gene name
Homology with Arabidopsis Similar to At5g23880: CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) (HF=7e-21)

Module size 6 genes

NF 0.51

%ile 67.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.97 Os09g0569400 AK063384.1 - RNA-metabolising metallo-beta-lactamase domaincontaining protein 7e-21 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) O.I. H.G. S.X.
0.91 98.9 0.97 Os04g0484800 AK068962.1 - Cullin family protein 6e-31 At2g04660 APC2 O.I. H.G. S.X.
0.71 89.6 0.97 Os11g0572100 AB109200.1 - DNA ligase (EC 6.5.1.2) 1e-20 At5g22010 AtRFC1 (replication factor C 1) O.I. H.G. S.X.
0.44 58.1 0.97 Os04g0101300 CB627192 - MRG family protein 1e-1 At1g02740 chromatin binding O.I. H.G. S.X.
0.35 41.7 0.97 Os03g0347200 AY017415.1 - Initiation factor eIF-4 gamma, middle domaincontaining protein 3e-8 At2g13540 ABH1 (ABA HYPERSENSITIVE 1) O.I. H.G. S.X.
0.32 36.3 0.96 Os11g0643700 CB632735 - Nuclear pore protein 84/107 family protein 6e+0 Atmg00150 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.1 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.3 99.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.8 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.1 99.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.7 99.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.065 1 GO:0006306 The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
0.059 1 GO:0006260 The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.
0.015 1 GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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