CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0558600

Gene name
Homology with Arabidopsis Similar to At5g60460: sec61beta family protein (HF=7e-1)

Module size 13 genes

NF 0.58

%ile 78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.97 Os09g0558600 AK064751.1 - Conserved hypothetical protein 7e-1 At5g60460 sec61beta family protein O.I. H.G. S.X.
0.74 91.4 0.97 Os01g0157001 9629.m00566 - - 6e-1 At1g65270 unknown protein O.I. H.G. S.X.
0.73 91.1 0.98 Os08g0562000 9636.m04569 - - 4e+0 At5g24560 AtPP2-B12 (Phloem protein 2-B12) O.I. H.G. S.X.
0.64 83.4 0.98 Os08g0165700 9635.m00582 - - 3e+0 At3g09900 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) O.I. H.G. S.X.
0.63 82.7 0.98 Os04g0523500 9632.m04244 - - 2e-1 At5g41390 - O.I. H.G. S.X.
0.63 82.7 0.98 Os01g0848000 NM_190602.1 - - 4e+0 At3g02860 zinc ion binding O.I. H.G. S.X.
0.59 78.0 0.98 Os08g0199500 9636.m00954 - - 3e+0 At2g32788 - O.I. H.G. S.X.
0.55 73.7 0.98 Os02g0542600 AK110826.1 - Hypothetical protein 1e-2 At5g44820 unknown protein O.I. H.G. S.X.
0.52 69.6 0.98 Os08g0188300 9636.m00841 - - 1e+0 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.50 68.0 0.98 Os07g0514600 9635.m03253 - - 6e-2 At5g39570 unknown protein O.I. H.G. S.X.
0.48 63.7 0.98 Os10g0129100 9638.m00309 - - 3e+0 At3g03600 RPS2 (RIBOSOMAL PROTEIN S2) O.I. H.G. S.X.
0.43 55.4 0.98 Os04g0425000 9632.m03337 - - 5e+0 At4g18205 - O.I. H.G. S.X.
0.41 52.4 0.98 Os10g0558200 9638.m03714 - 2OG-Fe(II) oxygenase domain containing protein 5e-1 At2g19590 ACO1 (ACC OXIDASE 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.6 99.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
14.6 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.080 1 GO:0009405 The set of specific processes that generate the ability of an organism to cause disease in another.
0.051 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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