CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0555100

Gene name
Homology with Arabidopsis Similar to At3g23805: RALFL24 (ralf-like 24) (HF=4e+0)

Module size 6 genes

NF 0.74

%ile 95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.99 Os09g0555100 9637.m03263 - Sulfotransferase family protein 4e+0 At3g23805 RALFL24 (ralf-like 24) O.I. H.G. S.X.
0.83 95.8 0.99 Os02g0174000 9630.m00729 - Myb, DNA-binding domain containing protein 1e-42 At1g79430 APL (ALTERED PHLOEM DEVELOPMENT) O.I. H.G. S.X.
0.80 94.6 0.99 Os01g0107200 9629.m00077 - - 1e-3 At1g22230 unknown protein O.I. H.G. S.X.
0.71 89.6 0.99 Os06g0174900 9634.m00714 - - 5e-2 At5g46030 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os04g0362450 9632.m02769 - - 6e-1 At1g62400 HT1 (high leaf temperature 1) O.I. H.G. S.X.
0.50 68.0 0.99 Os09g0447000 AY559046.1 - Homeobox-leucine zipper protein HAT14 (HD-ZIPprotein 14) 8e-6 At5g06710 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.4 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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