Co-expression analysis

Gene ID	Os09g0547500
Gene name
Homology with Arabidopsis	Similar to At2g35990: - (HF=5e-1)
Module size	6 genes
NF	0.29
%ile	30.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	77.0	0.80	Os09g0547500	AK062595.1	-	Lysine decarboxylase-like protein	5e-1	At2g35990	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.82	Os03g0225900	AY310358.1	-	Allene oxide synthase (EC 4.2.1.92)	2e+1	At5g26140	lysine decarboxylase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.81	Os09g0380600	AK063655.1	-	Conserved hypothetical protein	1e+1	At5g67070	RALFL34 (ralf-like 34)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	0.82	Os01g0656400	9629.m04484	-	WRKY transcription factor 15	8e-3	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	0.82	Os05g0546400	AK109087.1	-	Conserved hypothetical protein	1e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	0.81	Os03g0315400	BI807304	-	MYB-related protein 340	4e+0	At5g27247	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
36.9	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.9	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.0	98.0	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM278844	WuYun3-RSV infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.8	98.0	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM278845	WuYun3-RSV infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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