CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0541900

Gene name
Homology with Arabidopsis Similar to At1g20200: EMB2719 (EMBRYO DEFECTIVE 2719) (HF=1e-24)

Module size 6 genes

NF 0.59

%ile 80.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.97 Os09g0541900 AB031299.1 - Proteasome component region PCI domain containingprotein 1e-24 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) O.I. H.G. S.X.
0.73 91.1 0.98 Os05g0301500 AK067027.1 - Ribophorin I (Fragment) 7e-5 At1g76400 ribophorin I family protein O.I. H.G. S.X.
0.67 87.2 0.98 Os07g0209000 AK058399.1 - Dolichyl-di-phosphooligosaccharide-proteinglycotransferase (Oligosaccharyltransferase)-like 1e-24 At5g66680 DGL1 O.I. H.G. S.X.
0.67 87.2 0.98 Os05g0147400 AK062146.1 - T-complex protein 1, zeta subunit (TCP-1-zeta)(CCT-zeta) (CCT-zeta- 1) 6e-67 At5g16070 chaperonin, putative O.I. H.G. S.X.
0.44 58.1 0.98 Os06g0538000 AK069949.1 - Chaperonin Cpn60/TCP-1 family protein 5e-83 At5g26360 chaperonin, putative O.I. H.G. S.X.
0.32 36.3 0.97 Os01g0911200 AK101333.1 - Ribophorin II family protein 1e-6 At4g21150 HAP6 (HAPLESS 6) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.9 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.2 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.286 1 GO:0018279 The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine also occurs; this modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification.
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.163275.1.A1_at, orthologous to the query gene, Os09g0541900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 88.4 PtpAffx.163275.1.A1_at At1g20200 hypothetical protein - 1e-21 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) O.I. H.G. S.X.
0.67 91.1 PtpAffx.90841.1.A1_s_at At1g20200 hypothetical protein - 5e+0 At5g17600 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.57 84.2 PtpAffx.21366.1.A1_s_at At1g20200 hypothetical protein - 7e-16 At3g60820 PBF1 O.I. H.G. S.X.
0.57 84.2 PtpAffx.42665.2.S1_a_at At1g20200 hypothetical protein - 9e-120 At1g53850 PAE1 O.I. H.G. S.X.
0.50 78.6 PtpAffx.42299.1.A1_at At1g20200 - - 2e-102 At5g42790 PAF1 O.I. H.G. S.X.
0.47 74.6 Ptp.6410.1.S1_at At1g20200 hypothetical protein - 4e-10 At5g20180 ribosomal protein L36 family protein O.I. H.G. S.X.
0.47 74.6 Ptp.6188.1.S1_s_at At1g20200 hypothetical protein - 1e-100 At1g53750 RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) O.I. H.G. S.X.
0.46 73.7 PtpAffx.118080.1.S1_s_at At1g20200 hypothetical protein - 2e+0 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.
0.44 71.9 Ptp.4335.1.S1_at At1g20200 hypothetical protein - 2e-83 At3g22110 PAC1 O.I. H.G. S.X.
0.34 58.3 Ptp.5680.1.S1_s_at At1g20200 hypothetical protein - 2e-7 At5g47210 nuclear RNA-binding protein, putative O.I. H.G. S.X.
0.29 50.5 Ptp.1306.1.A1_at At1g20200 hypothetical protein - 3e-60 At5g66680 DGL1 O.I. H.G. S.X.
0.17 29.1 Ptp.535.1.S1_s_at At1g20200 hypothetical protein - 3e-147 At2g20140 26S protease regulatory complex subunit 4, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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