CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0541500

Gene name
Homology with Arabidopsis Similar to At2g20930: - (HF=3e-29)

Module size 13 genes

NF 0.50

%ile 65.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.96 Os09g0541500 AK060244.1 - Longin-like domain containing protein 3e-29 At2g20930 - O.I. H.G. S.X.
0.60 79.7 0.97 Os08g0554900 AK072840.1 - Nonaspanin (TM9SF) family protein 2e-39 At5g10840 endomembrane protein 70, putative O.I. H.G. S.X.
0.58 77.0 0.97 Os03g0783700 AF443602.1 - Clathrin assembly small subunit protein AP19(Clathrin assembly protein AP19, small subunit) 5e-19 At2g17380 AP19 O.I. H.G. S.X.
0.56 76.3 0.97 Os11g0433500 AK067849.1 - Protein transport protein Sec23A (SEC23-relatedprotein A) 1e-9 At4g14160 transport protein, putative O.I. H.G. S.X.
0.52 69.6 0.98 Os11g0181100 AK100605.1 - Nonaspanin (TM9SF) family protein 2e-70 At1g10950 endomembrane protein 70, putative O.I. H.G. S.X.
0.52 69.6 0.97 Os06g0568000 AK071892.1 - Nonaspanin (TM9SF) family protein 4e-107 At3g13772 endomembrane protein 70, putative O.I. H.G. S.X.
0.47 62.3 0.97 Os05g0461000 AB042259.1 - Clathrin adaptor complex, small chain familyprotein 5e-1 At4g08520 clathrin adaptor complex small chain family protein O.I. H.G. S.X.
0.46 60.9 0.97 Os07g0496000 AK111986.1 - Nt-rab6 protein 9e-68 At2g44610 RAB6A O.I. H.G. S.X.
0.45 58.8 0.97 Os08g0248900 AK073613.1 - ADP-ribosylation factor 3 2e-46 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) O.I. H.G. S.X.
0.42 53.9 0.97 Os02g0722300 AK064958.1 - Nonaspanin (TM9SF) family protein 6e-21 At4g12650 - O.I. H.G. S.X.
0.40 51.1 0.97 Os05g0461300 AK111917.1 - Ras-related protein Rab-8A (Oncogene c-mel) 4e-48 At3g53610 ATRAB8 O.I. H.G. S.X.
0.40 51.1 0.97 Os05g0556100 AK065908.1 - SDL5A 1e-43 At3g61760 ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B) O.I. H.G. S.X.
0.35 41.7 0.97 Os12g0207300 AF443601.1 - Clathrin coat assembly protein AP17 (Clathrin coatassociated protein AP17) (Plasma membrane adaptor AP-2 17kDa protein) (HA2 17 kDa subunit) (Clathrin assemblyprotein 2 small chain) 9e-55 At1g47830 clathrin coat assembly protein, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
44.3 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
40.7 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.5 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.097 3 GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
0.095 5 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
0.057 1 GO:0007186 The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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