CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0531200

Gene name
Homology with Arabidopsis Similar to At2g01080: - (HF=7e-1)

Module size 6 genes

NF 0.73

%ile 95.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.97 Os09g0531200 AK064107.1 - RNA recognition motif 2 domain containing protein 7e-1 At2g01080 - O.I. H.G. S.X.
0.77 93.1 0.98 Os11g0295700 9639.m01769 - - 5e+0 At4g39570 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.73 91.1 0.98 Os08g0515100 NM_188989.1 - Sulfotransferase family protein 2e-3 At3g45080 sulfotransferase family protein O.I. H.G. S.X.
0.67 87.2 0.98 Os12g0448100 9640.m02506 - - 1e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os05g0225100 AK109834.1 - Conserved hypothetical protein 2e-1 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) O.I. H.G. S.X.
0.57 77.0 0.98 Os04g0422700 AK111485.1 - Conserved hypothetical protein 5e-1 At2g11005 glycine-rich protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.0 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.821.1.A1_at, orthologous to the query gene, Os09g0531200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.5 ZmAffx.821.1.A1_at At2g01080 - - 3e+0 At3g21840 ASK7 (ARABIDOPSIS SKP1-LIKE 7) O.I. H.G. S.X.
0.65 82.1 Zm.1482.2.A1_at At2g01080 hypothetical protein LOC100279242 - 7e+0 At5g17280 unknown protein O.I. H.G. S.X.
0.55 71.6 Zm.4471.3.A1_x_at At2g01080 pyruvate, orthophosphate dikinase1 - 6e+0 At2g36895 unknown protein O.I. H.G. S.X.
0.49 61.9 Zm.2041.1.A1_at At2g01080 hypothetical protein LOC100191381 - 3e-3 At4g24770 RBP31 (31-KDA RNA BINDING PROTEIN) O.I. H.G. S.X.
0.47 59.9 Zm.9975.1.A1_at At2g01080 - - 7e-6 At5g64200 ATSC35 O.I. H.G. S.X.
0.40 48.5 Zm.18816.1.A1_at At2g01080 indole-3-acetate beta-glucosyltransferase - 1e+0 At4g33730 pathogenesis-related protein, putative O.I. H.G. S.X.
0.39 45.6 Zm.3780.3.S1_at At2g01080 - - 2e+0 At1g29720 protein kinase family protein O.I. H.G. S.X.
0.35 38.9 Zm.19250.1.S1_at At2g01080 - - 3e-12 At4g24740 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) O.I. H.G. S.X.
0.31 31.6 Zm.6454.1.A1_at At2g01080 PP1/PP2A phosphatases pleiotropic regulator PRL1 - 9e-29 At4g15900 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) O.I. H.G. S.X.
0.30 29.8 Zm.628.1.A1_at At2g01080 glutathione S-transferase12 - 6e-1 At3g21960 - O.I. H.G. S.X.
0.30 29.8 Zm.13763.1.A1_at At2g01080 hypothetical protein LOC100279845 - 2e-4 At4g38690 1-phosphatidylinositol phosphodiesterase-related O.I. H.G. S.X.
0.27 24.6 Zm.5280.1.S1_at At2g01080 - - 2e-8 At1g76760 ATY1 (ARABIDOPSIS THIOREDOXIN Y1) O.I. H.G. S.X.
0.27 24.6 Zm.1056.1.S1_at At2g01080 ribosomal protein S22 homolog - 3e-17 At5g62300 40S ribosomal protein S20 (RPS20C) O.I. H.G. S.X.
0.24 19.8 Zm.3699.5.A1_at At2g01080 - - 3e-2 At5g09995 unknown protein O.I. H.G. S.X.
0.24 19.8 Zm.2810.1.S1_at At2g01080 calcitonin peptide-receptor component protein - 7e-1 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.22 16.9 Zm.2094.1.S1_at At2g01080 hypothetical protein LOC100192908 - 8e-19 At2g36060 ubiquitin-conjugating enzyme family protein O.I. H.G. S.X.
0.19 12.8 Zm.2016.1.S1_at At2g01080 zinc finger, C3HC4 type family protein - 2e+0 At5g51195 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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