CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0531200

Gene name
Homology with Arabidopsis Similar to At2g01080: - (HF=7e-1)

Module size 6 genes

NF 0.73

%ile 95.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.97 Os09g0531200 AK064107.1 - RNA recognition motif 2 domain containing protein 7e-1 At2g01080 - O.I. H.G. S.X.
0.77 93.1 0.98 Os11g0295700 9639.m01769 - - 5e+0 At4g39570 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.73 91.1 0.98 Os08g0515100 NM_188989.1 - Sulfotransferase family protein 2e-3 At3g45080 sulfotransferase family protein O.I. H.G. S.X.
0.67 87.2 0.98 Os12g0448100 9640.m02506 - - 1e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os05g0225100 AK109834.1 - Conserved hypothetical protein 2e-1 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) O.I. H.G. S.X.
0.57 77.0 0.98 Os04g0422700 AK111485.1 - Conserved hypothetical protein 5e-1 At2g11005 glycine-rich protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.0 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1613804_at, orthologous to the query gene, Os09g0531200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.84 94.8 1613804_at At2g01080 hypothetical protein LOC100241466 - 4e+0 At5g53690 unknown protein O.I. H.G. S.X.
0.32 43.1 1617340_x_at At2g01080 - - 5e+0 At5g07250 ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3) O.I. H.G. S.X.
0.30 39.4 1608163_at At2g01080 hypothetical protein LOC100249111 - 9e-5 At5g24360 IRE1-1 (INOSITOL REQUIRING 1-1) O.I. H.G. S.X.
0.30 39.4 1621721_at At2g01080 hypothetical protein LOC100248049 - 3e-17 At5g08320 unknown protein O.I. H.G. S.X.
0.26 32.0 1609562_at At2g01080 hypothetical protein LOC100255509 - 5e-52 At2g21150 XCT (XAP5 CIRCADIAN TIMEKEEPER) O.I. H.G. S.X.
0.24 28.7 1613750_at At2g01080 hypothetical protein LOC100257580 - 1e+0 At4g20470 unknown protein O.I. H.G. S.X.
0.23 27.5 1615834_at At2g01080 similar to Os02g0137600 - 3e-1 At1g76220 unknown protein O.I. H.G. S.X.
0.23 27.5 1606477_at At2g01080 hypothetical protein LOC100253462 - 3e-66 At5g59910 HTB4 O.I. H.G. S.X.
0.21 24.0 1615553_at At2g01080 hypothetical protein LOC100261677 - 3e+0 At2g20690 lumazine-binding family protein O.I. H.G. S.X.
0.20 22.4 1613678_at At2g01080 hypothetical protein LOC100245213 - 2e-12 At3g58490 phosphatidic acid phosphatase family protein / PAP2 family protein O.I. H.G. S.X.
0.18 19.4 1618544_at At2g01080 similar to pumilio domain-containing protein PPD1 - 4e-20 At4g25880 APUM6 (Arabidopsis Pumilio 6) O.I. H.G. S.X.
0.18 19.4 1612148_at At2g01080 hypothetical protein LOC100252593 - 1e+0 At5g46780 VQ motif-containing protein O.I. H.G. S.X.
0.15 15.6 1613680_a_at At2g01080 WD repeat 2 - 4e-63 At1g12910 ATAN11 (ANTHOCYANIN11) O.I. H.G. S.X.
0.14 14.4 1611143_at At2g01080 hypothetical protein LOC100266764 - 4e+0 At1g14490 DNA-binding protein-related O.I. H.G. S.X.
0.11 11.3 1615586_s_at At2g01080 hypothetical protein LOC100260303 - 1e-32 At3g55830 EPC1 (ECTOPICALLY PARTING CELLS) O.I. H.G. S.X.
0.11 11.3 1613052_at At2g01080 hypothetical protein LOC100257519 - 2e-12 At2g42710 ribosomal protein L1 family protein O.I. H.G. S.X.
0.07 7.8 1611111_at At2g01080 hypothetical protein LOC100256502 - 3e-33 At1g63500 ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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