CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0531200

Gene name
Homology with Arabidopsis Similar to At2g01080: - (HF=7e-1)

Module size 6 genes

NF 0.73

%ile 95.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.97 Os09g0531200 AK064107.1 - RNA recognition motif 2 domain containing protein 7e-1 At2g01080 - O.I. H.G. S.X.
0.77 93.1 0.98 Os11g0295700 9639.m01769 - - 5e+0 At4g39570 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.73 91.1 0.98 Os08g0515100 NM_188989.1 - Sulfotransferase family protein 2e-3 At3g45080 sulfotransferase family protein O.I. H.G. S.X.
0.67 87.2 0.98 Os12g0448100 9640.m02506 - - 1e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os05g0225100 AK109834.1 - Conserved hypothetical protein 2e-1 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) O.I. H.G. S.X.
0.57 77.0 0.98 Os04g0422700 AK111485.1 - Conserved hypothetical protein 5e-1 At2g11005 glycine-rich protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.0 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.5494.1.A1_at, orthologous to the query gene, Os09g0531200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 PtpAffx.5494.1.A1_at At2g01080 - - 1e+0 At4g23240 protein kinase family protein O.I. H.G. S.X.
0.61 87.0 PtpAffx.11154.2.S1_at At2g01080 hypothetical protein - 7e-10 At1g68490 unknown protein O.I. H.G. S.X.
0.61 87.0 PtpAffx.200720.1.S1_at At2g01080 hypothetical protein - 1e-42 At1g50460 HKL1 (HEXOKINASE-LIKE 1) O.I. H.G. S.X.
0.50 78.6 PtpAffx.145434.2.A1_at At2g01080 - - 1e-5 At1g28360 ERF12 (ERF DOMAIN PROTEIN 12) O.I. H.G. S.X.
0.29 50.5 PtpAffx.82511.1.A1_at At2g01080 AP2/ERF domain-containing transcription factor - 1e-1 At1g22190 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.29 50.5 PtpAffx.11154.3.S1_a_at At2g01080 hypothetical protein - 1e-7 At1g68490 unknown protein O.I. H.G. S.X.
0.27 47.1 Ptp.5500.1.S1_at At2g01080 hypothetical protein - 1e-26 At5g19530 ACL5 (ACAULIS 5) O.I. H.G. S.X.
0.16 26.9 PtpAffx.202729.1.S1_at At2g01080 hypothetical protein - 1e+0 At3g51730 saposin B domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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