CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0528800

Gene name
Homology with Arabidopsis Similar to At5g41940: RabGAP/TBC domain-containing protein (HF=2e-11)

Module size 6 genes

NF 0.07

%ile 5.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.83 Os09g0528800 AK070219.1 - RabGAP/TBC domain containing protein 2e-11 At5g41940 RabGAP/TBC domain-containing protein O.I. H.G. S.X.
0.22 19.4 0.96 Os03g0246800 AK070145.1 - Guanine nucleotide exchange factor-like protein 1e-39 At3g60860 guanine nucleotide exchange family protein O.I. H.G. S.X.
0.14 9.3 0.92 Os02g0557200 AK070026.1 - Auxin response factor 1 1e-22 At1g59750 ARF1 (AUXIN RESPONSE FACTOR 1) O.I. H.G. S.X.
0.07 3.7 0.94 Os07g0690400 AK068590.1 - Protein phosphatase 2C-like 3e-28 At1g68410 protein phosphatase 2C-related / PP2C-related O.I. H.G. S.X.
0.05 2.5 0.90 Os04g0683600 AK065557.1 - Receptor kinase-like protein 3e-7 At1g63430 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.02 1.0 0.94 Os02g0208900 AK070031.1 - ZIGA2 protein (Fragment) 6e-3 At4g32630 ARF GTPase activator/ zinc ion binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.5 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.9 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.1 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0006417 Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.
0.143 1 GO:0043087 Any process that modulates the rate of GTP hydrolysis by a GTPase.
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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